Detail information of BGIOSGA016952_circ_igg.1


General Information
CircRNA Name BGIOSGA016952_circ_igg.1
ID in PlantcircBase osi_circ_014690
Alias Chr04:29431132_29432682(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 27658191-27659741  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCTCTGGCAATCTCTCGCATTCCTTATTCAGTAGTTGAAGAATATACAAGCACAGGCTTGGAA
GAATTGTTTGCTGATGTTGGAACTTGGAAGAAACAGggcctgggacttggcaaaattgcaatgg
actcaccctttctggtcatacaggagctataatgcccttgctctgctgggatcaatttctatta
tcttgttc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCCTGGGACTTGGCAAAATTGCAATGGACTCACCCTTTCTGGTCATACAGGAGCTATAATGCC
CTTGCTCTGCTGGGATCAATTTCTATTATCTTGTTCTCTGGATCAAACAATCAAGGTTAGTCTT
TCATTTAATCATCATCACATTCAGTAATCACTATGCTGTCAAATCATGTCTTCATAATGCACGT
GAACTTCAAATCATGTCTTTGTTAGGTCTGGGCTGCTATGGAAAGTTGGAAACTGGAAGCCTGG
CAGTAACATATACACATAACGAAGATCATGTATGGCACCACACTCTCATTGATGCACACCAATA
AATTCTTGAATGCCAATTGCTTAAGCAGCTTTATTTGTGGTGACAGGGGGACTATATAGCTAAC
CACATTTTAAGATGCTTTCACCTATTTCTCTGATTTTGCTAGTATGTTTCCCCTGATTATGGTG
TCCTTAATATTATTATTATTGGGCAGAGATGATTCTGAATCCCTGAATATTTTGTATTTTTGTG
CGGCGCATGAATAATTTGTGTTTTGTAGTGGAGCTAGACTCATTTGATGTCATCTTTTCAAATG
CATTGCAATAACATGGCAAGTACCTTCTATGAAAATTCTGTTACTTAAGAAGAAAAACATAGTG
TTTTATCTCTATATGTTTATTATGGTTTCTGAAGGAGGGGATGAGAATTACAAGGTTGTGTTTT
TAATACAATACTAGATTCAATCTAGAGAGGCGGGATCTAGAAAATTAGAAATGTAACTGAACAG
TGATGGTTGCTTTGATTTTTTTTTTGGTGCAATAATAAAATTAAACCTTGCTGATTTCTACTTT
TCATGGGTGTATAGCAAGTTAGCAGTTACCCCATTAATGTTCTTAGTCTACAGAGAAAAATGTT
TGTTTTCTTGATAACTATAACTGGACCATAAGCATTTTTAACATAGTTGTAGCTCTCATCATAC
CATACATTTACCATTTTGTTCACCTGTTCCTGTTTTTTTTTCTTGCTGATGGAACAATGGTTCT
CATTTCATGTGTAGGGTGCACTTGCTCTTGCTGGTATGCAAGATGCACAATTAAACCCTATTCT
GCTATGGTCAACGAATTACAACATAGTCCACCTCTATGAGCTCCCATCGTAAGCAAGATAATGT
AGTTTTAAGAATTACTCGTATTTAATAAAGTATGGCACCATGCTTATCCTAAACTTTTTTAATC
TATTTTATAGGTTTGCTGAGAGAGGTAAAATATCCTTTGAAGCGGAAGTTGGAGCAGTGAAAAA
TGGTCCTGGTGGATTAATATTTACTAGCGATGAAATTGGCAAACTAAAGTTGTGGAAATGGACA
GCTGAACGAACTTCTGGAGTCTCAAACTGATGGGCTTGTGTATTTAGAATGGAGGAACAGGTCA
GAAAAGCCGTTTTCCTGAACAGAGAGACCTTTGGCAGCCAATTTGCTCTGGCAATCTCTCGCAT
TCCTTATTCAGTAGTTGAAGAATATACAAGCACAGGCTTGGAAGAATTGTTTGCTGATGTTGGA
ACTTGGAAGAAACAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021