Plant Circular RNA Database

Detail information of POPTR_0014s09100_circ_g.1

			
						 General Information
					
						CircRNA Name
						POPTR_0014s09100_circ_g.1
					
						ID in PlantcircBase
						pop_circ_003490
					
						Alias
						Chr14:7412896-7416746
					
						Organism
						
							Populus trichocarpa						
					
						Position
						
							chr14: 6711816-6715666  JBrowse»						
					
						Reference genome
						
							Populus trichocarpa genome v3.0 						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							POPTR_0014s09100						
					
						Parent gene annotation
						
							NA							
					
						Parent gene strand
						-
					
						Alternative splicing
						
							NA						
					
						Support reads
						NA
					
						Tissues
						stem xylem
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						POPTR_0014s09100.1:3

General Information
CircRNA Name	POPTR_0014s09100_circ_g.1
ID in PlantcircBase	pop_circ_003490
Alias	Chr14:7412896-7416746
Organism	Populus trichocarpa
Position	chr14: 6711816-6715666 JBrowse»
Reference genome	Populus trichocarpa genome v3.0
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	POPTR_0014s09100
Parent gene annotation	NA
Parent gene strand	-
Alternative splicing	NA
Support reads	NA
Tissues	stem xylem
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	POPTR_0014s09100.1:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							ATTGCGAGGTTCTAGCGTCAAGGGATCATAGCCTTTTGCTTGAAGGTCTGCATTCCCATGTACA
TCATTTGCAACCAGCTCCTCTGCAACTTGGTCCATActgaaccacaccatcatagtcagttgaa
gccaaatagttcttgatgtaattgttccagcatacagaactgatcttagatttgtttgacatct
caaccgtg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTGAACCACACCATCATAGTCAGTTGAAGCCAAATAGTTCTTGATGTAATTGTTCCAGCATACA
GAACTGATCTTAGATTTGTTTGACATCTCAACCGTGGGATAATGGATATCTATGGAGTCATTTA
AAAGTGCACCAAACTCAAAAACCTTGATTTTCTTTGATACGCCAGCAGCAGCAATATAATCCTC
GTCACGATCAAAACTCAAAGTACAAACTACATTTGTGGAGCTCATAAAATCTCCATTTTTGAGT
GATCCACACACCTCAAACCTGCTATAACTAGCAAACTTGCAGAGACCTTCAAAAAAGGCTCCAA
GGGGATCATCTGATCTCTGATTTGTGTTTGAGTCCTCTCTGTTATACTGAACTGCAGGCAAACT
ATCTCGGTTCTTGAGCAAGTCTTTATCAGAGGGAGGGGCAGAAGAAGTATGGCGGATTTGAGAT
CTCATGGAGAAGTAGGCATTCTTGATTTGGTTAATATTTCTGCTCAACCTTGCCTCATTCTTCT
TTGATACTGAAAACGAACTAGAAATAGCAACCGAACCAGGATACAGGTCCTGTTCTCTTGAATC
GAGGCATCTCTCTTGTGTCTCAGAAACAATTTTGGGTGTTCTCAATAAATGCCTTTTCTCAACC
TCTTTGATATCTTCTTCTAAGCATTCAATATCTACAAGCAACTTTGCCTCATGTTTCTGCTTTT
GTTCTTTCAATAAGCTTAGAAAATGATGCAACAGCCCCGGTTCAGTATCATCATTGTCAGGAGT
TGTTGATACATTGTTCCCGGAAGACAGTTCCCCGGATCGACATAGTAATTCAGACTGCAGGATT
TCCCTGTTGCACACCAAATAGAGGACTTTGAAACGCATCATGTTTAAACATGTTCACATACTAA
AACATACAGAAACTAATGTATCATTATGATGCATCACAGTTGTTTGACAATCTACATGAAACAG
AACGAACAGTATACTGCTGGCAGCTAGAGTTGTATAGGTTATTAAACCAAGAATGAGTAAAAGG
CATCGTAATGGAAGGACATGTTTGTTTGGCAGAAATAACAGAATCCACTTCGGAAAAAAGATAG
CAAAAACAAGCCCTTGTTGAAGATTAACCAACCCATCAGGCTCCAAAGGAACAATAAATAAAGA
TTAAAAAGTAACAAATATTGAGCTTTAATCTTCTTCTGAATCATTGAAGTCGGCTCTTGAAATA
ATATTTAATGATTTTTCTTTACTTGTCGATTGTGATCATCACAAAAGATCTCATAACTTAAGCT
ATACCCGCTATATCTTGGGTTACATAGGAATAGGAACATAAAAAGCATAAGAAACACATCAGTT
ATCAATGTAAACAAGCAGTTAGATACACAGAGCTTAATTGTTATGAGTAGATCCCCTTGCTCAC
TTTAGTTGGCATTCAACTGTAATCATAAGAAGCCCAATAATGTATAGAACTACATGCTGACCTC
AGCAACTCTATCCAAATGAATGATTATAGCTGAACTAGAATCTAAGCCACCATTGAAGAAACGG
CTCAAGTTCACCATATGGATCCCCATAATTAGTTGCCAATGATGCTCGGTAGGGCATAAAAGTG
GCACCACTACAAAAATACTAAAAAGAAGTGGATTGGTTTATGCTAGGACCAGGAAGGCTACTAA
AGAAAAGGAATACGGAAATACATCTCCACTTCTCTCAGGCCTGTTCATAATCACCGATGTTCAA
TGAATCATCTATTGCAACAATAACAACACAGATCCTTGAAATAATAACATCACTGAGATTGAAG
AACATTACAATTTAACAGTTATAGTAGAAGGCAGTAGATAAATCAAATACTGACATGGTTATAT
ACCTAGCTGTTGGACGAGACGAAGGTTCAGGATGAAGAAGCCAAAGACAAAAGCCAGCTTCCCT
TGGATTTTCTGAAAGAAAACTTGGTGGTAGAATCCGATCACGCAAATCCAGCATCACCGCAGAA
TTTTCCTCAAATGACTCGAACCTGCTGAGCAACTGCTAGCAACAGAAACATTAGATTGAAAGGA
TAGGCTTTTGGCTCAACTACTAAGCAGGAGTACTTTTATGTATGGGAAGTAATTCTTTCCTCAT
CTATGTAAGAGTATGATGACAAATATTGCTCAGCAATTATAGATGACAGAATGACTAGTTTCTA
AACTGAAATAGTTTAAATAAAAGCTCTAACACATCACAAAAAGGATAATAGTTACTACATATTC
AAAAAACTACTTTCCAAGTGCGTCAAGACTATGAATCAGTTTTAGTTGAGCTATTTTTTTCAGG
CATGCTAAAAAAATCATAAATTTGATTTAGTGTGCTAAGCAGCAAGACACATAATGAATTTCAA
TAACAGCATGCAAAGTTAAAATGCAGATCTTGTCACCTCAAAAAGCAGGACCCCTAGGTTATAG
ATATTTGATGAAAAGGTGATAGGTCCTCCATTCAGCAGTTCTGGACTTCTATACCATTTTTCTT
CCGATTGTAAAGTTAAAGAAAAAGACAGTTGCCTTGTTTCCATACATGAACTTTGGTAATTAGA
ATGCTTCTGAGACTGAAGTTCCACAAATCTAGAGTCTTGTGCACCAGTTTCATGAATATTATTT
CCATCCATTGGCTTTGTCCCAAACCCAGAACTAGAGCTATACCGAGACTGCTGTTGAAGTGATT
TTGTTTCTTCACCCAGTCTTTGCTTCTTTGGAACTAAACTACAATAGGAACCCGCAACTTGCTC
CAGTGGCCTTTTCTTAACAAAAGCACAGGGTATAGGAACCCCTTGTTCTGTCTTGGTAGAAGAA
CCAATGTAAATGACCCGATTTGATGGCAATAAATTAAAACAGGATGGACGTAAGTCTTGAAAGG
CAACTCCTTGAGAGTGTGCTAAATCCACCAACTCCACAGTTTGCTTAAATATCAGCAGGCTTTC
AACTTTATCTCTTCTACAATGCCCAGGTTTCAGCCACTCTCTCAAACTGATCCCTTCATGTAAG
GATTCAGGACAAGACCTATCAACCCTATTCTTATCGTTATTGGAACTTGATCTCACTAGTGCAT
CAGAAGCAACTTTCCTTGCATAATCCAGTTTTCCATCAGTAGGGCCAGCATCTGCACCCCCACA
TTCAGGGAGAGCTTCTTGGTTTCTGCAGAGAACGCCCTTTCCTTTAAAGACTTTCTTCAGCGGT
GGCTGAGAAAAGCCAGGCATGGATGAGGTCTTCAAGGAAGCATCCCCATTGGGCAGTATAATGC
TTGATACAACCCTCTTGTCACTAGCCCTCGAATGTGTAGAAATTGCTTTGCTGTCATGACCAAA
ATGCTTCGTCGACAAAGGTTTCAAGCCACTCCACAGGTCAGAACGCATTTTCATCAACTGCTTT
CCAGCTCTTGATAGCAGTTTTTCCTTGTCTTCGTGCACATAATCACCATGTGAAGCCTTATCTC
TTGATCCATTTACGAATTGATATATATTTTGCCATCTGTGTTGCCTGTTACTGTCTAGGCTTCG
ACCTAAAGCTTGATGTGAAGTCCAATAGTTTCCCACTGTCAATTTTTCAACCACATGCCCACTA
TCCTTCACAGAGCAAGGGATACTGCAAGGGGGTTCAGCTTCCGCCAAAGTTATTGCACTTCTAC
TTAAGTCCTTTTCCTCCATTCTGCTTGTATCCATATAATCAGTGGTGGAGCTCTCCGCCCAATC
ACTCCTCGTGGATGCACACATTATTGGTGATCCCAAAGCATTGCGAGGTTCTAGCGTCAAGGGA
TCATAGCCTTTTGCTTGAAGGTCTGCATTCCCATGTACATCATTTGCAACCAGCTCCTCTGCAA
CTTGGTCCATA
						
					

			
		

Sequences
Splice junction sequence	ATTGCGAGGTTCTAGCGTCAAGGGATCATAGCCTTTTGCTTGAAGGTCTGCATTCCCATGTACA TCATTTGCAACCAGCTCCTCTGCAACTTGGTCCATActgaaccacaccatcatagtcagttgaa gccaaatagttcttgatgtaattgttccagcatacagaactgatcttagatttgtttgacatct caaccgtg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTGAACCACACCATCATAGTCAGTTGAAGCCAAATAGTTCTTGATGTAATTGTTCCAGCATACA GAACTGATCTTAGATTTGTTTGACATCTCAACCGTGGGATAATGGATATCTATGGAGTCATTTA AAAGTGCACCAAACTCAAAAACCTTGATTTTCTTTGATACGCCAGCAGCAGCAATATAATCCTC GTCACGATCAAAACTCAAAGTACAAACTACATTTGTGGAGCTCATAAAATCTCCATTTTTGAGT GATCCACACACCTCAAACCTGCTATAACTAGCAAACTTGCAGAGACCTTCAAAAAAGGCTCCAA GGGGATCATCTGATCTCTGATTTGTGTTTGAGTCCTCTCTGTTATACTGAACTGCAGGCAAACT ATCTCGGTTCTTGAGCAAGTCTTTATCAGAGGGAGGGGCAGAAGAAGTATGGCGGATTTGAGAT CTCATGGAGAAGTAGGCATTCTTGATTTGGTTAATATTTCTGCTCAACCTTGCCTCATTCTTCT TTGATACTGAAAACGAACTAGAAATAGCAACCGAACCAGGATACAGGTCCTGTTCTCTTGAATC GAGGCATCTCTCTTGTGTCTCAGAAACAATTTTGGGTGTTCTCAATAAATGCCTTTTCTCAACC TCTTTGATATCTTCTTCTAAGCATTCAATATCTACAAGCAACTTTGCCTCATGTTTCTGCTTTT GTTCTTTCAATAAGCTTAGAAAATGATGCAACAGCCCCGGTTCAGTATCATCATTGTCAGGAGT TGTTGATACATTGTTCCCGGAAGACAGTTCCCCGGATCGACATAGTAATTCAGACTGCAGGATT TCCCTGTTGCACACCAAATAGAGGACTTTGAAACGCATCATGTTTAAACATGTTCACATACTAA AACATACAGAAACTAATGTATCATTATGATGCATCACAGTTGTTTGACAATCTACATGAAACAG AACGAACAGTATACTGCTGGCAGCTAGAGTTGTATAGGTTATTAAACCAAGAATGAGTAAAAGG CATCGTAATGGAAGGACATGTTTGTTTGGCAGAAATAACAGAATCCACTTCGGAAAAAAGATAG CAAAAACAAGCCCTTGTTGAAGATTAACCAACCCATCAGGCTCCAAAGGAACAATAAATAAAGA TTAAAAAGTAACAAATATTGAGCTTTAATCTTCTTCTGAATCATTGAAGTCGGCTCTTGAAATA ATATTTAATGATTTTTCTTTACTTGTCGATTGTGATCATCACAAAAGATCTCATAACTTAAGCT ATACCCGCTATATCTTGGGTTACATAGGAATAGGAACATAAAAAGCATAAGAAACACATCAGTT ATCAATGTAAACAAGCAGTTAGATACACAGAGCTTAATTGTTATGAGTAGATCCCCTTGCTCAC TTTAGTTGGCATTCAACTGTAATCATAAGAAGCCCAATAATGTATAGAACTACATGCTGACCTC AGCAACTCTATCCAAATGAATGATTATAGCTGAACTAGAATCTAAGCCACCATTGAAGAAACGG CTCAAGTTCACCATATGGATCCCCATAATTAGTTGCCAATGATGCTCGGTAGGGCATAAAAGTG GCACCACTACAAAAATACTAAAAAGAAGTGGATTGGTTTATGCTAGGACCAGGAAGGCTACTAA AGAAAAGGAATACGGAAATACATCTCCACTTCTCTCAGGCCTGTTCATAATCACCGATGTTCAA TGAATCATCTATTGCAACAATAACAACACAGATCCTTGAAATAATAACATCACTGAGATTGAAG AACATTACAATTTAACAGTTATAGTAGAAGGCAGTAGATAAATCAAATACTGACATGGTTATAT ACCTAGCTGTTGGACGAGACGAAGGTTCAGGATGAAGAAGCCAAAGACAAAAGCCAGCTTCCCT TGGATTTTCTGAAAGAAAACTTGGTGGTAGAATCCGATCACGCAAATCCAGCATCACCGCAGAA TTTTCCTCAAATGACTCGAACCTGCTGAGCAACTGCTAGCAACAGAAACATTAGATTGAAAGGA TAGGCTTTTGGCTCAACTACTAAGCAGGAGTACTTTTATGTATGGGAAGTAATTCTTTCCTCAT CTATGTAAGAGTATGATGACAAATATTGCTCAGCAATTATAGATGACAGAATGACTAGTTTCTA AACTGAAATAGTTTAAATAAAAGCTCTAACACATCACAAAAAGGATAATAGTTACTACATATTC AAAAAACTACTTTCCAAGTGCGTCAAGACTATGAATCAGTTTTAGTTGAGCTATTTTTTTCAGG CATGCTAAAAAAATCATAAATTTGATTTAGTGTGCTAAGCAGCAAGACACATAATGAATTTCAA TAACAGCATGCAAAGTTAAAATGCAGATCTTGTCACCTCAAAAAGCAGGACCCCTAGGTTATAG ATATTTGATGAAAAGGTGATAGGTCCTCCATTCAGCAGTTCTGGACTTCTATACCATTTTTCTT CCGATTGTAAAGTTAAAGAAAAAGACAGTTGCCTTGTTTCCATACATGAACTTTGGTAATTAGA ATGCTTCTGAGACTGAAGTTCCACAAATCTAGAGTCTTGTGCACCAGTTTCATGAATATTATTT CCATCCATTGGCTTTGTCCCAAACCCAGAACTAGAGCTATACCGAGACTGCTGTTGAAGTGATT TTGTTTCTTCACCCAGTCTTTGCTTCTTTGGAACTAAACTACAATAGGAACCCGCAACTTGCTC CAGTGGCCTTTTCTTAACAAAAGCACAGGGTATAGGAACCCCTTGTTCTGTCTTGGTAGAAGAA CCAATGTAAATGACCCGATTTGATGGCAATAAATTAAAACAGGATGGACGTAAGTCTTGAAAGG CAACTCCTTGAGAGTGTGCTAAATCCACCAACTCCACAGTTTGCTTAAATATCAGCAGGCTTTC AACTTTATCTCTTCTACAATGCCCAGGTTTCAGCCACTCTCTCAAACTGATCCCTTCATGTAAG GATTCAGGACAAGACCTATCAACCCTATTCTTATCGTTATTGGAACTTGATCTCACTAGTGCAT CAGAAGCAACTTTCCTTGCATAATCCAGTTTTCCATCAGTAGGGCCAGCATCTGCACCCCCACA TTCAGGGAGAGCTTCTTGGTTTCTGCAGAGAACGCCCTTTCCTTTAAAGACTTTCTTCAGCGGT GGCTGAGAAAAGCCAGGCATGGATGAGGTCTTCAAGGAAGCATCCCCATTGGGCAGTATAATGC TTGATACAACCCTCTTGTCACTAGCCCTCGAATGTGTAGAAATTGCTTTGCTGTCATGACCAAA ATGCTTCGTCGACAAAGGTTTCAAGCCACTCCACAGGTCAGAACGCATTTTCATCAACTGCTTT CCAGCTCTTGATAGCAGTTTTTCCTTGTCTTCGTGCACATAATCACCATGTGAAGCCTTATCTC TTGATCCATTTACGAATTGATATATATTTTGCCATCTGTGTTGCCTGTTACTGTCTAGGCTTCG ACCTAAAGCTTGATGTGAAGTCCAATAGTTTCCCACTGTCAATTTTTCAACCACATGCCCACTA TCCTTCACAGAGCAAGGGATACTGCAAGGGGGTTCAGCTTCCGCCAAAGTTATTGCACTTCTAC TTAAGTCCTTTTCCTCCATTCTGCTTGTATCCATATAATCAGTGGTGGAGCTCTCCGCCCAATC ACTCCTCGTGGATGCACACATTATTGGTGATCCCAAAGCATTGCGAGGTTCTAGCGTCAAGGGA TCATAGCCTTTTGCTTGAAGGTCTGCATTCCCATGTACATCATTTGCAACCAGCTCCTCTGCAA CTTGGTCCATA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.106063284

Conservation Information
Conserved circRNAs	NA
PMCS	0.106063284

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							6715625-6711856(+)
6715540-6711816(+)
6715667-6715633(-)
6711834-6715633(-)
						
					

						Potential amino acid sequence
						
							MYIICNQLLCNLVHTEPHHHSQLKPNSS*(+)
MHTLLVIPKHCEVLASRDHSLLLEGLHSHVHHLQPAPLQLGPY*(+)
MDQVAEELVANDVHGNADLQAKGYDPLTLEPRNALGSPIMCASTRSDWAESSTTDYMDTSRMEE
KDLSRSAITLAEAEPPCSIPCSVKDSGHVVEKLTVGNYWTSHQALGRSLDSNRQHRWQNIYQFV
NGSRDKASHGDYVHEDKEKLLSRAGKQLMKMRSDLWSGLKPLSTKHFGHDSKAISTHSRASDKR
VVSSIILPNGDASLKTSSMPGFSQPPLKKVFKGKGVLCRNQEALPECGGADAGPTDGKLDYARK
VASDALVRSSSNNDKNRVDRSCPESLHEGISLREWLKPGHCRRDKVESLLIFKQTVELVDLAHS
QGVAFQDLRPSCFNLLPSNRVIYIGSSTKTEQGVPIPCAFVKKRPLEQVAGSYCSLVPKKQRLG
EETKSLQQQSRYSSSSGFGTKPMDGNNIHETGAQDSRFVELQSQKHSNYQSSCMETRQLSFSLT
LQSEEKWYRSPELLNGGPITFSSNIYNLGVLLFELLSRFESFEENSAVMLDLRDRILPPSFLSE
NPREAGFCLWLLHPEPSSRPTAREILQSELLCRSGELSSGNNVSTTPDNDDTEPGLLHHFLSLL
KEQKQKHEAKLLVDIECLEEDIKEVEKRHLLRTPKIVSETQERCLDSREQDLYPGSVAISSSFS
VSKKNEARLSRNINQIKNAYFSMRSQIRHTSSAPPSDKDLLKNRDSLPAVQYNREDSNTNQRSD
DPLGAFFEGLCKFASYSRFEVCGSLKNGDFMSSTNVVCTLSFDRDEDYIAAAGVSKKIKVFEFG
ALLNDSIDIHYPTVEMSNKSKISSVCWNNYIKNYLASTDYDGVVQYGPSCRGAGCK*(-)
MMVWFSMDQVAEELVANDVHGNADLQAKGYDPLTLEPRNALGSPIMCASTRSDWAESSTTDYMD
TSRMEEKDLSRSAITLAEAEPPCSIPCSVKDSGHVVEKLTVGNYWTSHQALGRSLDSNRQHRWQ
NIYQFVNGSRDKASHGDYVHEDKEKLLSRAGKQLMKMRSDLWSGLKPLSTKHFGHDSKAISTHS
RASDKRVVSSIILPNGDASLKTSSMPGFSQPPLKKVFKGKGVLCRNQEALPECGGADAGPTDGK
LDYARKVASDALVRSSSNNDKNRVDRSCPESLHEGISLREWLKPGHCRRDKVESLLIFKQTVEL
VDLAHSQGVAFQDLRPSCFNLLPSNRVIYIGSSTKTEQGVPIPCAFVKKRPLEQVAGSYCSLVP
KKQRLGEETKSLQQQSRYSSSSGFGTKPMDGNNIHETGAQDSRFVELQSQKHSNYQSSCMETRQ
LSFSLTLQSEEKWYRSPELLNGGPITFSSNIYNLGVLLFELLSRFESFEENSAVMLDLRDRILP
PSFLSENPREAGFCLWLLHPEPSSRPTAREILQSELLCRSGELSSGNNVSTTPDNDDTEPGLLH
HFLSLLKEQKQKHEAKLLVDIECLEEDIKEVEKRHLLRTPKIVSETQERCLDSREQDLYPGSVA
ISSSFSVSKKNEARLSRNINQIKNAYFSMRSQIRHTSSAPPSDKDLLKNRDSLPAVQYNREDSN
TNQRSDDPLGAFFEGLCKFASYSRFEVCGSLKNGDFMSSTNVVCTLSFDRDEDYIAAAGVSKKI
KVFEFGALLNDSIDIHYPTVEMSNKSKISSVCWNNYIKNYLASTDYDGVVQYGPSCRGAGCK*(
-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	6715625-6711856(+) 6715540-6711816(+) 6715667-6715633(-) 6711834-6715633(-)
Potential amino acid sequence	MYIICNQLLCNLVHTEPHHHSQLKPNSS(+) MHTLLVIPKHCEVLASRDHSLLLEGLHSHVHHLQPAPLQLGPY(+) MDQVAEELVANDVHGNADLQAKGYDPLTLEPRNALGSPIMCASTRSDWAESSTTDYMDTSRMEE KDLSRSAITLAEAEPPCSIPCSVKDSGHVVEKLTVGNYWTSHQALGRSLDSNRQHRWQNIYQFV NGSRDKASHGDYVHEDKEKLLSRAGKQLMKMRSDLWSGLKPLSTKHFGHDSKAISTHSRASDKR VVSSIILPNGDASLKTSSMPGFSQPPLKKVFKGKGVLCRNQEALPECGGADAGPTDGKLDYARK VASDALVRSSSNNDKNRVDRSCPESLHEGISLREWLKPGHCRRDKVESLLIFKQTVELVDLAHS QGVAFQDLRPSCFNLLPSNRVIYIGSSTKTEQGVPIPCAFVKKRPLEQVAGSYCSLVPKKQRLG EETKSLQQQSRYSSSSGFGTKPMDGNNIHETGAQDSRFVELQSQKHSNYQSSCMETRQLSFSLT LQSEEKWYRSPELLNGGPITFSSNIYNLGVLLFELLSRFESFEENSAVMLDLRDRILPPSFLSE NPREAGFCLWLLHPEPSSRPTAREILQSELLCRSGELSSGNNVSTTPDNDDTEPGLLHHFLSLL KEQKQKHEAKLLVDIECLEEDIKEVEKRHLLRTPKIVSETQERCLDSREQDLYPGSVAISSSFS VSKKNEARLSRNINQIKNAYFSMRSQIRHTSSAPPSDKDLLKNRDSLPAVQYNREDSNTNQRSD DPLGAFFEGLCKFASYSRFEVCGSLKNGDFMSSTNVVCTLSFDRDEDYIAAAGVSKKIKVFEFG ALLNDSIDIHYPTVEMSNKSKISSVCWNNYIKNYLASTDYDGVVQYGPSCRGAGCK(-) MMVWFSMDQVAEELVANDVHGNADLQAKGYDPLTLEPRNALGSPIMCASTRSDWAESSTTDYMD TSRMEEKDLSRSAITLAEAEPPCSIPCSVKDSGHVVEKLTVGNYWTSHQALGRSLDSNRQHRWQ NIYQFVNGSRDKASHGDYVHEDKEKLLSRAGKQLMKMRSDLWSGLKPLSTKHFGHDSKAISTHS RASDKRVVSSIILPNGDASLKTSSMPGFSQPPLKKVFKGKGVLCRNQEALPECGGADAGPTDGK LDYARKVASDALVRSSSNNDKNRVDRSCPESLHEGISLREWLKPGHCRRDKVESLLIFKQTVEL VDLAHSQGVAFQDLRPSCFNLLPSNRVIYIGSSTKTEQGVPIPCAFVKKRPLEQVAGSYCSLVP KKQRLGEETKSLQQQSRYSSSSGFGTKPMDGNNIHETGAQDSRFVELQSQKHSNYQSSCMETRQ LSFSLTLQSEEKWYRSPELLNGGPITFSSNIYNLGVLLFELLSRFESFEENSAVMLDLRDRILP PSFLSENPREAGFCLWLLHPEPSSRPTAREILQSELLCRSGELSSGNNVSTTPDNDDTEPGLLH HFLSLLKEQKQKHEAKLLVDIECLEEDIKEVEKRHLLRTPKIVSETQERCLDSREQDLYPGSVA ISSSFSVSKKNEARLSRNINQIKNAYFSMRSQIRHTSSAPPSDKDLLKNRDSLPAVQYNREDSN TNQRSDDPLGAFFEGLCKFASYSRFEVCGSLKNGDFMSSTNVVCTLSFDRDEDYIAAAGVSKKI KVFEFGALLNDSIDIHYPTVEMSNKSKISSVCWNNYIKNYLASTDYDGVVQYGPSCRGAGCK( -)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Liu et al., 2021

circRNA

Detail information of POPTR_0014s09100_circ_g.1

Address

Any questions?

Supported by