Detail information of AT3G08020_circ_g.3


General Information
CircRNA Name AT3G08020_circ_g.3
ID in PlantcircBase ath_circ_020406
Alias 3:2559508-2560451
Organism Arabidpsis thaliana
Position chr3: 2559508-2560451  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G08020
Parent gene annotation PHD finger family protein
Parent gene strand -
Alternative splicing AT3G08020_circ_g.1 AT3G08020_circ_g.2 AT3G08020_circ_g.4 AT3G08020_circ_g.5 AT3G08020_circ_g.6
Support reads 1/1/2
Tissues seedling;root;leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G08020.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGTACCTTGTGTGGAGGATGTTGGCAATAACAATGGTAAGCAGCATCACACCTTTTGCAGAA
CATGAACTTGTTAGGATCTCCTGTTCTACGGCAGACctgataacactccccacggcatgtggca
catttatattgtagctttccatcaacttgaaactgcatatatttgtcatcactgcatgacagtt
taaagagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGATAACACTCCCCACGGCATGTGGCACATTTATATTGTAGCTTTCCATCAACTTGAAACTGC
ATATATTTGTCATCACTGCATGACAGTTTAAAGAGGCAAACAATTTCAGATTTACTATAACTCA
AATACATTATGCGATGCATACTTAAAATATGACTCAATCTAATTGGTAGTATATATCAGATGGC
AGATGCAACAGAGATAACTATGTTTACAACAAAATAATGAGGACGAACCTTATTCCATCACAAT
GGCAATGCACCCAGCGTTGACAAATATCGCAGCATACCATTGGGGTTGATTCCGAATCCCTATA
CACCTATACAAGATAAGCAAAACCTGGTTAATGCAACACTAAAGAGGCGTTATGTTTTGCTACG
GGGATCAAGCATTAAAAAATAAAGGCCATGATAATGCTATTGCTAAGACTTATTTTGCTTAATA
TACCTTCAAGCATACAGGGCAATAATTTCCCTTAACAAACAATCTGCCACAAGCATCACAGCAA
GTATATGATAAAAACCACCTGTTACAGTAGAAAACAAGAAAGAACAAAAGTGATCAACAGACTT
TTAATAGGGCAATCTATCTGCAAATTCTTAACTAGCAAAACAAAGTATAATTGTTCTGCTCACT
TGTAAGACCAACCTACCCCGCAAGAGACTAAGAATGTATACCTGACACTCAGGCCATTTCCAGG
GACAGTAGAATCACAGCTGTGGCATCTTGTATGCTTTGGGCAGAGATATGGCCCAGAACTAACA
TTCTGTACGGTCAGGATAAAATAAATAAGCCAATTCACTTTACTTTAAAAGATAGTCACATGAA
GAGGCTATCTGTCAGGTACCTTGTGTGGAGGATGTTGGCAATAACAATGGTAAGCAGCATCACA
CCTTTTGCAGAACATGAACTTGTTAGGATCTCCTGTTCTACGGCAGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.175119208
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020