Detail information of BGIOSGA037494_circ_ag.1


General Information
CircRNA Name BGIOSGA037494_circ_ag.1
ID in PlantcircBase osi_circ_009759
Alias Chr12:18985370_18989920(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr12: 16522173-16526723  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACGGGAACCGTGGATACACATGCAATTGGCGCAAGCGTAACCAAGCTCATTGCAAAGTTTAGA
AGAATTGAGTATCTCTCCATTGACATAGACAAAAAGggccggtgattgtacaaattttgactgc
aaatgtgagcaatataaaggctggaataacaagatgattccactagagcgtcttcggattgcag
acatacgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCCGGTGATTGTACAAATTTTGACTGCAAATGTGAGCAATATAAAGGCTGGAATAACAAGATG
ATTCCACTAGAGCGTCTTCGGATTGCAGACATACGTAACTTTCTGCCTTTCGATGATCAAATAG
AATTGGTATGTGTACTAATTGCGAATGCGCCACTACTGGAGAAAATGACTGTAGCATTGCATGA
GTTATATGGAGAGACGAGACAGAGAAGAAATGACATGGATGCATATTTATGCATTCCAAGCTGT
GGGGGTCGTTGGACCCCTTGTTCTGGTAATGGGAGTAAATTTGGTAGTTTTACTAAATATGAGT
GGAAACCATATAAACGGAAACGGTGAGAAGAAAGGATGGAGAAGGTCAATGAGAAAAAGGGGTG
GAGAAGGTTTGAAATGCCTCATTAGATATGTTTTAATTATTGATCGATATATGTAATACATATA
TGAAATATATGCATGTATCTTTGGAGTTGATCGATTATACCTACTCCGTTTCAACAGAGTGAAC
AAAATTAATGTTATAGTGATTTTGCCATTTTTACCCTTATCGCTTTTAATCCATGTGTCTGTCC
ACGCCATTCCGCCGCCGAGGCGTGAGGAGGAGCACGGCGCTGCGCATCTCCCTCACGCCGTCGC
TGGCCCTGCACCGCCGTGGTGAGAGGTGTGGTTGCGGAGAACCGGTGGTGGTGGTGGTGTTGAT
CTGAAATTGCTGCTGTTGCTGCTGATCTGAAGCTGTCTATTGATGTGAACTTCTGAAGGCGTTG
ATGGCATGTTGTTACTAAAAACCATGTGCTTTCACAGAGAACTGATTTCCTGTTTGCCAGCAAC
AATCTTGGGTATCAAACATTCGATTACTGAAAAAATCAATTAGAAACATTAATATTGGTTTGTT
ACTTTCATTCATATTGTCATACTCCAGAAGATGTACTGACGCTTGAAAAAAAAAATCATATCGT
TCAAAAATCTGAACAATCTGCCATTCAGAACGTACAAGGAAAAGTTCAGTTCACTGTTGTGCGC
ATCCTGCCATGCAAAGCATGTGTGACCGGTATGTCCTGTCCGTACAATACAAAGTATCTGACTT
CTTCCTATTGACATCATTCATAGGTTTAGATTTTCATTATTCCAATGGACAGCACAGACACGAT
TCCAAATTGCGATACTGATATAGTATATTCAAATCAGACACCAGTCCAGAGTTGAGTTTCTAAA
AAAAAAAATGGAACAGTACAAGCACTCAAATTCGGCATGCTCACATGAAAATTTTCTGCCAAAA
ATTGGTAACTTATCCTAATTACAGAAGGTGTGGTGACCACTTACATGTGGACCTCATTTTTTTT
CTACTACTAGGATGCCACATCAGTGAAACGCCGAAACCAACCCTCTATGCTATCATGGGACCTA
ACTTGAACGGTTTTACTAAGATGAGGGGTGAAGATTTCTAATATTACGGTTTAGGGATGTCGAT
TAAACTTGACGTAAAAATGAGGGATGACAAGTGGATTTATTCCTTTTTAACAGCCATACCATCA
CAGATTTGCATAAGTTCACTTAGCTCCCTCATCATGACACCAAGGTTGAATTACGTCCTCGAAC
AGCAATACCAAATATAATGTATTTCTCAATTTATAAAACCAGTGTAATGAGGTCCCAAGCATTA
TAGTGCCAAATTTTGACTGACGAGTGGGACCATGTGGACCCCATATGTTAGGGCTATAATTCTT
CTTCCTCCAACCTCCCATCTCTCTCTCTCTCCATCTCTAATTCTTCTCTCTCCATTCCCCATCT
CCGCACGAAAAGTAATCAACTAGCTTTCACAAAGAATACTTGTGTAGTAGGCGTGGGATATGAT
TTGAAATGAATTTGTCTGATCGATCTGATCGTAGAGTTCGTCGAGATCCAACTGGTTCATTGTG
AATTTGTGTAGCCGGCGCCATTTCCTCCATCTGGTTCTTTTGGTTTTGTCTTCTTGGTTGACAT
CGCCGTGTCGGGGAATAATGGCAAGAGCAGATGTAGTCTCGCTGCTATCTTTTTTGTTGATGCT
GTCATGCCAAGGAATAGTAGCTAGATAGAATTTGTAGCTGGCTACTGGGTCGCGCTAACACAGT
GCAGGGTCGACTGCGGCCCGGTGAGCAGTGGTGGCGGATTCCTCGGGTAGCAGCACATCCGTAG
TAGTGCAGTAGTGCTTCTCGAAGGCGGCAGTCTCGGTGTTGCAACATCAGCGCTTGGAATTTAC
GGCGGCATGTCTGGAACAACGACATCGTTTGCATAGAGATGGCAGCGGGCGGCACTGCGTGCAA
TTCAGCCGACATGGGATGACTTCGTTCCATGGTCACGTGGGGCGGCTTCTTGAGGTAATTTTGC
AACAGCATGCCCTGGTGGGCAAAAGCCACTGCAAATCATAAATGGGGAATGGAGGAGAGAGAAT
AATAAAAAATGGAGAGAGATGGAAGGTTTTTTTTTTAAGATGGAGATGGAAGGTTGAAGGAAGA
AGAAATATATCTGACATGGAGGTTCACGACTTCACGTGGGTCCCACTTACCACATTAGTCAAAA
CCAGACGCTATACTGTCTAGGACCTCGGATATATCAGTTTTTGAAGTTAAGAGACATGTTATAT
CGGATACTGCGGTTCATAGCACGTAACTTGAACTTGACGTCAAAGATGAGAGACCTAAAGTGAA
CTTATCCCTCACAGATTACCACTTCCTGCAAGCGGTATCGGCGCTAAAAAAAAAGAAGCCCAAG
ACATCCTCCCCCCAGCCCAAGTTCCCAACCCCCCTCTAGGCGGCCCACCACACGGCCACTTCCC
CCCGGCCAGGCCCATCCGGGCCCACGGCCTGCGTCGCGCTTGGGGAACGCATGCGAACCAGGAG
CGAAACCCTAGATCGATCTCGAGTTCCTCTTCTATACTGAAAAACACTCATTCCTCCATCATTC
GATCTCGAATTCCACCCGCTCCCATACTTCCATGGACACCGAGATCACGCAGGAGACGGCGGCG
CCAGCGGCGGCGGCGGCGGACGTCGATATCATCAGCGACCTCACCAACGACGTGCTGCTGATAA
TCCTCGGCCTCTTGCCGGCGGCGAGGGACGTGGTGCGCACCTCCGCGCTGTCGACGCGGTGGCG
CCACCTCTGGACCCGCGCCCCGGCGCTCCGCTTCGACGTCGGCCCGCGCAGCTGGCGGCTAGGT
GGGTGTGGAGCCACCGACGAGGCCGCCGCCGCCGCCCGCCTCGTCGAGGCGGTGGACTCCGTCC
TCGCCAGGCGCGAGGGCGGCGCCGACGTGAAGGACCTGGAGATCAACCTCGTCCACCACTGCTC
CGATGGCGGCGACAGGCCGCCCATGTGCCACCGCTACGCCGCCATGTTCGTCTCCTCCCCTTCA
CCTTCACGGCACCGGGAGGAGCCGCGGTGCGACCTCCTCGCCGTGCCCCTGGACGTCGTCACGC
CGGCGCGCGTCGCCGCGTGGCTCCGCTTCGCCGAGCGCCGCGTCGCGGGGTCGTTCTCTCTCAG
GCTGCCCGCGCTGTCGAGGAGGATCGCGGCCGCCGGATCTCCCCCCGCCGTCCTCCCTTGCTCC
GAGAGGCTCCACACCATGCGCCTCGCGCTCGGCGGCGCGGCCCTCGCCGTTCCAGACGCCGTCG
CCGCCGCCGCCTACCGCTCTCTCACCGACCTGCTGCTCAGCAAAGTCTCCCTCGACGACGACGG
CGACGACCTCCGCCTCTGCAGCCTCCTCTCCTCCGCCAGCTGCCCTAACCTGCGGAGGCTGGAG
CTCAGCGACATCGACGGCCTGATCAACCTCCGCCTCGACGCCGCCGCGACGCTCGAGGTGCTCC
GCCTCATCGGCCTCCGCCACATGGAGCAGATGGAGGTGGACGCGCCGGGCCTCCGGGAGCTTGT
CCTCAAGCGCATCTACGCCCACCTGATGGCGGCGGCGTCGGCGTCGTCGGTGAGGATCGCCGCG
CCGGGGCTGCAGGCGCTGACGTACGAGTACGACTACGCGTGCTGGGGCGGCGCCTTCTCCATGG
TGCTCGACGGCGAGCGCACCGCGAAGCTCCAGGTGCTGTCCCATGGCGTCCCCGACAAGGACAA
CAACGGCGCGGCGGCGTGGTTTCTGCAGCACTGCGCCGCCGCGAATCACCTCGACGTCGTACTG
AAGATGGAATTTGATGAGGTAATTGATAACAAGAAGGGACCATGTCTTGTGCAAATTTTATACA
ATCTTTGAATTCCATGTTTGATCTTACATGCAAAAACTCTCGAAATAATACTGTACATACAAAT
TTAAGTGTGCTGCCGTACACTCTTGGGTTTATGCGGAATTTGTTAATTGTGACTCTCAATTGAT
TGAATTGCAGGAGAAGATGGAAGAGGATATTGAGGATCTGATCAAGGATATACCAGAAGTTCTT
AATATAACCGACTTACGAATAACGGTAGCCATCTCCACGGGAACCGTGGATACACATGCAATTG
GCGCAAGCGTAACCAAGCTCATTGCAAAGTTTAGAAGAATTGAGTATCTCTCCATTGACATAGA
CAAAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021