Detail information of BGIOSGA001442_circ_g.1


General Information
CircRNA Name BGIOSGA001442_circ_g.1
ID in PlantcircBase osi_circ_010066
Alias Chr01:21580909_21585811(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 22865858-22870761  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA001442
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA001442_circ_g.2 BGIOSGA001442_circ_g.3 BGIOSGA001442_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA001442-TA:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCTCACCGCTATTAAACGATTCTTGTGGTACACATTAAAGCCTTGTACATCAATTTCTGGGGC
GCCTTTGACAAATCCAATGGTGGTTATTGCAGATAGccttcagagcaagttgttttgctgactc
ctcgtattgcaagcatctgagaaaaaaaatgcaagttaaacaacaaaatatgcaagcagaattt
gcagcttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCAGAGCAAGTTGTTTTGCTGACTCCTCGTATTGCAAGCATCTGAGAAAAAAAATGCAAGT
TAAACAACAAAATATGCAAGCAGAATTTGCAGCTTTGTCATTATGGTAAGTATTTGAACTTCTA
TTACATAGAAGAACAGTGGTAAAGAACTGGACTTTACAGCTAGCCAAATAAGGCACAATGCAGT
TAAGGCACTAATTAAGCTGGTATTATCAATAGGTAATCAACTGACTGTGCCTACACATAAAGAA
GGCTACATTAGCAGATTTTACTTTGAAGCCTTTCTTTAGGAGATAGTTTGAACTTTGAAGAAGC
CTAATGCTTTTTTTCTCCCTGTTGGGAGTCAATGCTCAACTCTTCACTCTATTAGTATCTCTCG
AAGTGTACATTCACACATTGTTTCCTCACACTCTAGAGCACGGTGCACGCATGCACTGGTACAG
AAGGAAGAAGCACAAGGTATAGAGAAATATATCATTTCCTCTGTTACTCCCTTGCATATAGGCC
AACAACTAAACAAGTGCAGAGTTAATCACTTAAATAATATCAAATGCATGCAGAGAGCTGCTAC
TTTGATTGTCATTCTATGCCATCAATGCTATACATGCAACATGAAGTGCTCCGGTAAACTGCCT
TACTCGATTCTATCCTATGTATGCCATGTCCTCGCATGCATGCAAGACAGAGACTCAAATAACT
CAGAGCAATCCCTATATCTGCATGTAACTCAAGCACATCATGCATACAAGAACAAATTTAGCAT
ATGACCGTGTGCATAGTGCTAAAAACGGGAACAGAGGGAACTTTGGGTGCTATTAAAGTGAACC
GGTCATTTCCTGTGAACCAAAAAACATGAACTTTCAGTGATCCAAAACCAATTTTGCCGAGGAT
CATGCACCGACTTAACCAAATGTGACAAGATTATTCCAAACACTTCTGATAGCTTTCCATTTTC
TTTTTTATTTTATAATTCTCTTATCGGTAAAATGGGTCCATATTCCTCACTAACTAGTAACTAC
ACCATCTATAACAGGCAATCACATGCAGGAGAAGGCCTGAACTAAATTGCTTTAATGCAGTACT
TGTTCCTTAGAGAGTGACAAGATGATAATACACAAAAAGAAAGCACTGAAATGTGCAAGTTGGG
GATATTTTACTTACTCGCCACGCAACTTGTCATTCTCTAGTGTCAAAGTCCTGTATTCGTTAAA
CCTTCTCCGTTGAGAAACGTCCAAGTGCTGTCAAAAGAGGAAAAAAATAGTCATGTAACAATAT
TCAGTAATTTATAGGCATTTCTTATCGCACACTACGTATGATTAAAAGAGAAATTTTCACAATA
CTACAGGTTTGGGGCTTCTCCCACTTTGGCTGGGATGGCCCATATATCCTGCTATTCTTCTTCT
CTTCTTTGGCCTACCAGATTTTTTTTATGCACTTGGGAGATTCAAAATCTGTGGTTTAGCATTA
CAGCACCAAAACATTGGGTTTTGTGAAATTTAATCTTAAAACAAAACTTGCTTCTGTGATGGTG
GAAAAGATGGTAAGCATAGGCATAGTCCATGGAGTGTTGTGGTCTCAACTTCAAACTCAAGTGT
TAAATAAAACAAAATATGTTAATAGCGTCATCCATTTTACTTTTCTATTAGAACCATTTATCAT
AATTTTCTCACGTTAATGGATTTGAACTTCAAATTTTACACATAGGACTCAGAAGTATTTTGAA
AATCTTTGATGTTACTTTTCAACTCATACAAGCAAGAAGCATGATTACACCCCAAGCATGAGTT
ACCCCTCATATGTCATCATAGTTTTTTCAGATAAGGGAAAAGTTTTCATATGTAACAATAGTTA
ATAGAATAAGGTTTAGATTTTCAATAAACCATCAGCTACTAGTTTCCACCGCCTGTCTGCTGAT
ACTTACAGATCCATCTTGGTCAGCACTGTCTGTCTTGGATCCAAGGGCATCAATATTTCTCTTC
AATCCCATCTCTGTTAAATGTCAGAAAAATATTAACACCACAATCGATAATTAGAAAACTGGAC
CTGAAAAAAAAAAGTATTCGCTCTTTGACATCATATAAAAATTATTACGTTTTTGCCTTAATGC
AGGGGCCATAAATGTAGGGACAGCACAGCTGCTTGTCGGAATATCAGCAGCCAATAGCTGACGT
GGAACAATTGGCGGGGAACTGCCAGCATTCATCTGATTAGCACGATTAAGTGCACGGGAAGATT
TAGGTAATTTTTTGTTGTCATAACCAATACGATGGCAATGCAGGTCCCTACAAATATAATCAGT
TAGCATGAAAGTATGAATGACACAAAGTCATCATTCCAAATAAAGCACTACAACATGACAATGA
CGCAGCAAAAACCAATAGATTAATAAAAATTCAGAGATTGTTATAGCAGTTTTTTTTTTGTTGC
ACAAGTTGTATAGAAATACCAGAAGACGATGTTGACAGATAGTGGCTATTGCATCTCAAATGAA
GTAGTATTTGGCTTTGTTCAATATTGGAGAGCTAAAAATAGACATTATAGACTGCTGATTATTT
TTGACGTGATACTTAGGTGAAAAATATATTGCTGTGCCTACCAGTCTAGATTAGTCCAGTTACC
TATTTACTGTCAGACAAATATGCTGAAACCCTGCCAACCATACATTTTCTCTACTTTTTGGTTG
TGGCTATTTCCACTTTATCACGTAAATGTTACTATGCATCAACAAATACTACTGGTATAATTAA
GTACAAGAGTAACTAGCCAGCCTCTGGACAAGGCAAGGGCGACCATCTATGCAACTTTTTCAGC
AACCATATGATGGTCGAAATCCCACTGGGTTAAGTATGACAAGAAAGCAATTTTGCAGCTGTGG
GTTGAGGATTCAAAATCTTGAATTAGCAGTCAAATGTAAGCTTGTATCTCAAAAAAGGAATTAT
ACCTCTGACCGAGGAAATGGTAAGACCTCAATCTTTTTGGGTCACAAATGCCCAGTATGAATTG
AGTGAGAATGCAGATGTGTGCGCTGGTAGGTTTTTTATTCATGAAATCATGCACCTGCACATGT
GTATTGCGAGCATGCCATGTACAGTGCACACTTGCCTGTGTCGTGAAAAAATATGTGAAGTGCA
TTGCTGTGGAAGCATCACCTATATTGCCATGTAAGCATCAACTATATATTTGAGAGAAATACCT
AACAGAAGTTAAAAGCTAACTCGAATTTCACATGGACTCTGAGATGAGCATGTACTCAATCAAT
AAGTAAACTATTTCTTTTTTCTAAATAATCCTGACATAATCGAACTCCTAAAGGGCACAAACTG
CATATACAGTATTCACTCATGCATCTTTGTGGCATTGCATGCACTGCTGCACACCACTACCACT
GCTCATGTATTATTCTATCTCTTGCGGCTTTTCAAGACAACTTATCAAACCCCAAAGAAGTACG
CAACAATTAGAAACATGACAAAGTTCTGTTGAAATAGTTAAAAGAACAAAAACTTTACCAGTAT
TCATATGTCATTTCTTTCAAGCGGCTCTCCAGCCTTTGATAAAGGACCGACTTTTCAAAATCTT
GCTTGTCATGGGTAGGTTTGATGAAGTTTGCCTCTAGAATGCCTGAAAATGCCAACAAAAATTA
AAACGTATCCACTGCCATTCTTCTATAACTTACATTAACCACCCTGTTTTGGATAGCAGAACAT
CTCTTACCCACAACTCCTCGCCCTTTGCCATATGAGTTGTTCGCAACTTTCCAAAATGGCTGCC
GAAAAATTGCAAGTGATTTTTACTCAGTAAATGGAAACAATATAAATATACCAAGAAAATACCA
TTGTGAAAATCATATCTAGTTAATGACGTCCTACGGAAATTTGTATCAAAGTTGAGCCAAACAG
GTAATTTGATTTTGTCAAATATCTAGAAATAGTCCGGTAACAGCATTGAAAGAGTTTTCACTAG
TGTACTACTATTATACAATTGGAGAGAAGGCAATGTCAGAAGAAATAAAAACACAAGGTAATCA
GGACATCACATTTTACTTAAAATAGAGCATAAGAAAATAGGGTGGAACCACAGGTGGTAAGAAC
TAAGAACACTAAAGATGTAGGCAATGAGGAAAATGAGCATCCATTGATTTAAAAATGCAATCAG
TAGAACATAGCCTAGAGTTATCAACCAACTGAAGGGAAATCGTCGATATTAAATGGATCAATTT
TGGCAGGGTTCAATTCGTTGAATCCCCTGCAATTTCATCTAATAGTTATATCAGGAATTAAGAT
AAAGTCCATATACTGATGAATACCACTGTTCCAAATGGCGGTAATTGTCAAGGTAGTGACGGAT
CTACCACTACACTTCATGTATATTGGTGTAACATAACAGTTAAGTGCGCCATGAATGCACAAGC
TTTCAGGCAAAAAGAAAAAGCACTTTGCTGCATGACAGACAATTAGACATGCCATTACATATTG
CTTAGGATGGACATCTGCTGATATTTGACTTAAGGCAAGCGCTTCTCAATCATTAAGGCAATAA
TACCAGAAATTACAGAGAGAATATACTTAGCAATCCTTTGCATATCAACATGACATTTGTTGAG
CTATATGGAATTCAAGGCAATATTTTCGTATTTCAGCCATGGAAGCATTTTTTTAATGGAAACA
ATTTGTTGCACTCACTCATTTCATCCTTTCAAATGGAAAAATAGCACATGAACTCTTAGTGACA
TGCTGGGAGAGCAATAGAAAGAAAAGCAAATTAAACAGTATCTATCATGAGTCATGCAAAGAAG
AAAGTCCTCACCGCTATTAAACGATTCTTGTGGTACACATTAAAGCCTTGTACATCAATTTCTG
GGGCGCCTTTGACAAATCCAATGGTGGTTATTGCAGATAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021