Detail information of 1_circ_ag.2


General Information
CircRNA Name 1_circ_ag.2
ID in PlantcircBase ath_circ_001372
Alias NA
Organism Arabidpsis thaliana
Position chr1: 2659774-2663956  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method CIRI, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_ag.11 AT1G08430_circ_g.1 AT1G08430_circ_g.3
Support reads 18
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCGTGCTTATCTCTATCTTTGTCTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTG
CCTCCAACTTTGACACTCTCTCCCACTTCCTTCAAGattttggggacgaatattttgaagcgag
agagaagggggactacaaagtagtggagaagaggaaaaagaatcttgagagatataaaagtgtt
cttgactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTTTGGGGACGAATATTTTGAAGCGAGAGAGAAGGGGGACTACAAAGTAGTGGAGAAGAGGAA
AAAGAATCTTGAGAGATATAAAAGTGTTCTTGACTCCAAAAGCGATGAAGAAGCTTTGGTGGGC
TACTCTCTCTCTTTCTTTCCCTACTTGCTTCACAATTATGAAATCATTTGGATTGATTTTGTTT
TGATATTTTGCGTTTAGGCTAATTACGCAGAATGGGAACCGCCTCATGGACAATTTAGGTTTAG
GCATCCATGGAAACAATATGTTGCCGTTGGTGCATTACTCCGGCAGTGTGCCTACAGGATTGAT
GCCTTGAATTCATACATCAACTCAGATTTTCAGGTAATCGCTAACTTTTTGTTAGGTGTTTGCA
TATTTAATTAAAACAAAATTTGAAAATACATAAAAGAAGAAAAACTAATATGCTATTATGCTAT
AACTATTTTTGATCTAATACAATATATATATCTATATATATATATATATATATATTTACATGTC
GCAAATGCAAACACAAAAATAACATCAGGTTGAAATTCTTAGTCTGTTAATTTGTTTATATAGT
TTTTTTTTTTAGTGTAAACATGTATAGTAGTATATGTTTCTGGTTAACGTGTTTCTAACCCTTT
GTTTATTTCTTATTTTTTCTATTAGATCCCAGTGGACATAAAAAAGAAATTAGAAACACCATTA
AGAAGAATGAGCTCGGAATCGGGAAACTCAATGAAAGAAATGTCCATTTCACTAAAACAAATGA
TAAAATCATCTTCTTCTGATATCCATGTCTCAAACTCACAAGCTGCATGCAAATCTCTTTCTAC
TTTACTTAAATCAGGCATCTTGAACGATGTTGAGCCTCTTCAAATGATCTCATTGATGACGACT
GTCTCCATGCTCATAGATATTGTTAACTTAACCGAAAAGATCTCGGAATCTGTACACGAGCTTG
CATCCGCTGCAAGATTTAAGAACAAGATGAGGCCGACCGTGCTATACGAGAAGTCGGATTCCGG
AAGCATTGGTCGTGCCATGCCAATAGATTCTCATGAAGATCATCATGTTGTCACAGTTTTACAT
GACGTTGATAATGATAGATCAAACAATGTTGATGATTCACGTGGAGGGAGTTCACAGGACTCAT
GTCATCATGTTGCCATAAAGATTGTTGATGATAACTCAAACCATGAAAAACATGAAGATGGTGA
AATACATGTACATACATTAAGTAATGGGCATCTTCAGTAAGTAATTCAACTCATTATTTGAGGA
GCAGTCTTTTGTACCCGCAAGATTATAGAGACGAGACCATCGGTATATAACATATTCGGGTATT
TCATTCAGATTTGAAGTTTGTTACAAATACTATTGTCGCCTTTGATCATTTTTGAACTATTGGT
CACACATTTAATAAAGTCTTGGTCTTCGTTTTCCTTTGCGTTACTCTTTTAAAGATTTTTATAT
CCAACTGATCAAAAAATTTAAAAATAGCATGGTTTTATTTTTGGATTATGGTGTTTTAGAGAGC
TAACCTCAGTAAATAAAAGAACATAGACCGGCGCCAGATAAAGACAAGTCCGGCAAAAACTCTA
GATTGTTATTTTCTATGAATATAATTAATTTTATTCCAAACATATATCGTATGAAAAAAAAAAT
CATTTATCATTGGAGGAGGCGGTGATCAGGCGCAGTGAGAGGAGGAGTCGGTTAACAAAAGTGG
TCTTGGCCAGTGCCAAAGCGTCATTGTAATCGCTTTCAATTCTCAAAACCAATACGGTAATATG
CACAACTAATAGAATGTTTCAGGTGACAAATTTTCTCACTAAAGTCAAACTTTCATACTTGCCG
ATGAAGTAACAAACATACAGTACGTTCAATACATTAAGGATATATATAAGAAACAAAAGCTGGA
AATTGTGTGAATTTAGCTAGGTTAGATTATAGTATAATAAAGTTGCCTTGTACGATTGGGGTAA
TGGCTAATGGATTCCGTACGTTGATGCCAACTTGGTATTGGCAAGGCTGAGTGTGACTCGGTGC
AAAAAGCACCAGCTGCTATCTAATTCCGCGTTCTAACCAATACTACATTTTCATTTATTATTAC
TTTTTACAATCCATAAATCTCTCTGCTGTGGAGGGTTGATATAAGATCCGAAACTTCTTTGTTG
ATAAAAAAAAATCTAACAATCTTCCAAGTTCAAATCTCACTCAGGAAATATGAATGACTGAATA
TTTAATTAGATATTATCGAAATTGTGATTCTTGTTGACAAAAAAAAACAAATCTCATAAGAAGT
GGTGATGTCAGTTTTCGTTGAGAGAAAGAGAATTTAAGTGGATATGTTCAATATACAAAAAAAA
AAAAAAAAAAAAAATTGGACAATTTGGTCGAATATTAATAAGGTAGGTCTAAATATTAGTGAAA
GTAACATATGTGAATGCCCAAAACGGACGGATATTTTACTAGCTTTGAAACAAAGAAACGATGG
GACAAAATGACAAATTGAATGTCTATTTATTTGGAGTTTGTCATGATTATTCATGTCAAAAACG
CAAACTATTATTAATAGACTGTTTATTTTATTATTTTCTTACACTCGCCGAAAATGTTCAGAAT
CGGAAATAATTAGATGTAACGTTCCTGTAAAAAATGCATTGAGTTTTAATTTTATTTTATTTTC
TTAAAGATAAAAAATTTCTGTTAAATGAAAAATGAAAGAGTTGTGAATTACGTTTTTTTTTTTA
ATATTGATTATAAATGTACAGCTAGCAACTTTAAAAATGGTTAGAAAACAAATGTTGGATAGCA
CTATTTTATTTTTACATAAAGAAAATCTTTTGGACGTGGAATTTTAATAGAAATTTCGGAAATA
AATTAAGAGAACAATACTAAAGTATGCTACTAATAGCCGCTTTTAAATATCGGATAAATCAGCA
CCAAAGTAGAACTTGGTTACGTAAGTACTAGTCTCTGCCTCTAATTAAAAATACTCTGTCTCCA
GTTAATTATATTTCTCATTTTCAATTTCTTTAACCCTCAACGTACGATATGAAGTACAACGCAC
CACTGATTTTTTTCTTAAAATAATAAAATAACATTTCACGAGTCCCGAACAGGACTCTCTAGTC
TCATAATGCTCATTATAAATAACGACGATCCATCCGCTCAAAACAACAAGTCATCTTTCTACTT
CTTCCTCTCTTTCTGAAACTTATCAGAAAGTTGAGTGATAATCAAAGGGTGTAATGGAGAAAGT
GAGAGAGATTGTGAGAGAAGGGAGGAGAGTAGGTAAAGAAGATCCGAGAAGAGTAGTGCATGCT
TTCAAAGTGGGACTTGCTCTTGCTTTGGTCTCTTCCTTCTATTATTATCAACCTCTCTACGACA
ACTTCGGTGTCAATGCAATGTGGGCTGTCATGACCGTCGTTGTTGTTTTTGAATTCTCTGTAGG
TCAGTATTCGTCATGTGATCAGAATCAGCCACTTTCTACCATTTGAATATGTCTAATATTCAGC
GATAAACATTTTGTAGATTTTTCTGTATAAATTTGGCTACAAAAGGTTGTTTAACTTTTGTTTG
GTGTGTAATTAGGGGCCACACTTGGGAAAGGACTAAATAGAGCAGTGGCAACATTGGTAGCAGG
AGGACTAGGGATTGGAGCTCATCACCTAGCAAGTTTGTCGGGTCCAACAGTAGAACCCATTCTT
CTTGCCATCTTTGTCTTTGTCCTAGGTAACCCTCATAACACTCATATTTTTTTATTTTTTTTAT
ATGAAATTTTGATGATTTGGTCCATATAACCTTTTCGGACGGGGGCTAGAGCGAAGAGTCTAGA
AAACATGCATATATGCATACATTTGTCTCGAATTAAAGAGCGAAGACTAACAATATATATATAT
ATGCAGCTGCATTGTCGACGTTCGTGAGGTTCTTCCCGCGGGTGAAGGCAAGATATGATTATGG
GGTATTGATATTCATATTGACGTTCGCACTGATATCAGTTTCGGGGTTTAGAGAGGACGAGATA
TTGGATTTGGCGCATAAGAGACTATCGACAGTGATAATGGGAGGAGTTAGTTGCGTGCTTATCT
CTATCTTTGTCTGCCCTGTTTGGGCAGGACAAGACCTTCATTCTCTCCTTGCCTCCAACTTTGA
CACTCTCTCCCACTTCCTTCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.367268983
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017