Detail information of Os11g0217500_circ_g.6


General Information
CircRNA Name Os11g0217500_circ_g.6
ID in PlantcircBase osa_circ_008873
Alias Os_ciR7256
Organism Oryza sativa
Position chr11: 6120412-6123433  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os11g0217500
Parent gene annotation Similar to mRNA capping enzyme, C-terminal domain containing pro
tein, expressed. (Os11t0217500-01)
Parent gene strand -
Alternative splicing Os11g0217500_circ_g.1 Os11g0217500_circ_g.2 Os11g0217500_circ_g.3 Os11g0217500_circ_g.4 Os11g0217500_circ_g.5 Os11g0217500_circ_g.7 Os11g0217500_circ_g.8 Os11g0217500_circ_g.9 Os11g0217500_circ_g.10 Os11g0217500_circ_g.11 Os11g0217500_circ_g.12 Os11g0217500_circ_g.13
Support reads 2/5
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0217500-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTATAAGGTGCATAATCGTTCCTAATCTGCTGAGAATGTAATCTTGAGCCTTCATCTTGTTG
CTCTCTCTTTAATTTTTTGCGTCTCTCTTCACGCTCagggggcatttccagcaagcgataacat
acgacacgcagagcatcttgctgatcatatggtacagcatctcctagcacatcatcattagtga
taacttta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1180
Transcript exons: 6120412-6121018,6121094-6121231,6122527-6122589,6122664-
6122747,6123031-6123182,6123298-6123433
AGGGGGCATTTCCAGCAAGCGATAACATACGACACGCAGAGCATCTTGCTGATCATATGGTACA
GCATCTCCTAGCACATCATCATTAGTGATAACTTTATCTTCCACCTCATTCTGCAAGATACAAG
GGCTCAAAAGCAAGAAAATAGCTTTGAATATTCCAAGCAAGTTTGCTTCATGACAATTAAAAAA
AACAATATGAGCCAGGAGATATAGTAAATTACATCCAAAGTAAAGTCCAAAAATCCAATCAAAT
AATAAAGTAGGTCGTATGAACTCAAAACTCTACCTTTATGTCCATAAATGAAAAACCTTTCGAG
AATTACAAGGAATCAGGCACTTAATTCTCTACCAAATTACTTGGAAGTAATTTCAGATTTGAAT
ATCTGAAAATGCTTACATGTACTGGTGCAAGATCACCATTCTCATCATCATCATCTTGCTTGGC
TTCACCATTTAAATCAAGATCGGATGACCTTTTCCATTCTGGTGTTGAAGGGCATGTTATCATA
TGCTCAGGAACCTCATGATAAAATGAATACAGTGCTTCAATGTAGTCCCTCTTATATATACCAG
GCGGTCTCCTTTTTGCAAATATGTTTATCGCCTCAGCGACGCAGGATACTTGTGTTCGCATAAG
GTAATGGATAATCATGAAACCAGTACGATTATGACCATGGGTACAGTGAACAAGAATATATTTA
GGATTCTTTGACTGCTTCTGTCGGTCAAGAAACATCATCACCTCATAGACAAACCAATTAACAG
ATTCATTATCAGGTACAGCATCTCTTCCCTTGCATGGAATCTTGACATGCTTAATACCTTGCCT
TGTCCATTCTGCAGGTGAGTAATATCGAGTAGTATTTGTCAAATCAATCACCAAACCTATTTCA
CGACCAGCTTTTCTTTGTTTATTAACTACTTGTTTGGAAGAATATCTTTTCCCAGGAGGCACCA
AGTCATTGAATGTTTCATCAAGAGGAACCTTGGAAGGTATGATTTTGTCTATTGGCTCACCAAA
TGCTGGACAATTCATCCAACCATCAGGTGCCTCTTTTATTCGACCTCTACCAGCTCTGTTATAA
GGTGCATAATCGTTCCTAATCTGCTGAGAATGTAATCTTGAGCCTTCATCTTGTTGCTCTCTCT
TTAATTTTTTGCGTCTCTCTTCACGCTC

Genomic sequence AGGGGGCATTTCCAGCAAGCGATAACATACGACACGCAGAGCATCTTGCTGATCATATGGTACA
GCATCTCCTAGCACATCATCATTAGTGATAACTTTATCTTCCACCTCATTCTGCAAGATACAAG
GGCTCAAAAGCAAGAAAATAGCTTTGAATATTCCAAGCAAGTTTGCTTCATGACAATTAAAAAA
AACAATATGAGCCAGGAGATATAGTAAATTACATCCAAAGTAAAGTCCAAAAATCCAATCAAAT
AATAAAGTAGGTCGTATGAACTCAAAACTCTACCTTTATGTCCATAAATGAAAAACCTTTCGAG
AATTACAAGGAATCAGGCACTTAATTCTCTACCAAATTACTTGGAAGTAATTTCAGATTTGAAT
ATCTGAAAATGCTTACATGTACTGGTGCAAGATCACCATTCTCATCATCATCATCTTGCTTGGC
TTCACCATTTAAATCAAGATCGGATGACCTTTTCCATTCTGGTGTTGAAGGGCATGTTATCATA
TGCTCAGGAACCTCATGATAAAATGAATACAGTGCTTCAATGTAGTCCCTCTTATATATACCAG
GCGGTCTCCTTTTTGCAAATATGTTTATCGCCTAGAATGAAAATGAGGTCAAGAAGAACAGTAG
AACTAAGTCAAACAAACAACATTGAGAATCTAGTTGGCATACCTCAGCGACGCAGGATACTTGT
GTTCGCATAAGGTAATGGATAATCATGAAACCAGTACGATTATGACCATGGGTACAGTGAACAA
GAATATATTTAGGATTCTTTGACTGCTTCTGTCGGTCAAGAAACATCATCACCTGAAATAACAG
AAAAAAATCATTCCATAAATATACATTGAATGCTGTCTGTACATATGGTTGCTAACTACATACA
TCTGAATCTATTGTTCTATGGTACAAAATAATAAAGAAAATCATTGGTTGCAGATGAGGAAATA
AGTCATTAAAAATAATGTAACAGAAAATATATATATAATGGTTTATATACTTCAACGCGTATAT
CATTGAATTTGGTGAGCCCAAATTGTTGTTGCAGAAAAACCTAGATCATTTAACCACTATACAC
CATTCCCATGAACTGATGATCCAAAGAAATATGCATACAGGTAACAGGATCTTTGATAATGAAA
GATGCCAAAGTGCAAACACCTTTTAAGTTACAAAGTAGGTATAAACTACCGTGCGAAGAAATAA
GTACTCCCTCTGATGCAAACTGTAATTCGTTATATGTATTGACCAGTGGCGGAGCCACGTTAAA
ACTGTGGGGTTGCATCATACACCTTGATCATGTGAAAAATAGTGAAGAAATACATAAAACAATG
AAAATTTGTATGGATTGACCCCACATAGTTACATATTTATGCATTTTGAACGCACAGGGTTGAG
AACCTAGCTCCGCCACGGGTATTGACAGAGAGTCTCCGATGGACACATTGACCATCACTTTTTT
TTATAGTTGTATGTATGTTTCAAAAAAATACAAAAGAGAGCTATCAAATTTACAATTACATGCG
GCAAATACATTTATTTTTAGAAATAATAATAAAGGTAAAAAATTCCAAAATTTTGGCTTCACGT
GTTCCAAGACGACACACGGTAGTTACATGCAAAGCCAAAATCTGCAGTTCATAACCATTTAATA
ACTAAACTGTCATGGCACCTTTAACATGTGCAGACCAAAACATCATAATAGGTATATATTGACA
CATTGCACAACTTAATCAATATCACATGAAGTTAAAAACATGTAGCTCCTAATTAAAAGGTAAA
ACTACTTTTTAGGCCTTGGTTCAGTTAATCCCTTCCCAAGAGGATTGGAGGGGATTAATTCCAC
ATCTTTCAAATCTCAATCCCCTCCAATCACTTCCTCATGGGGATTAACTGAACATGCCCTTAGA
GAATAAGCTCAAACACTTGAGGAACAAAAAGAAAACAGCTCACAAGAAACAAATTGCAAACACA
ATGGGATAGGAAAACAAATGAAATACTTTAAAAATGTGAAAGAATTAAGCAACAGACTCCTACT
TGGACAAATAAACACCAGAATCAAATATACTGCTGATACAAAACATGTAGCCAAATATAGGTGT
TACCTCATAGACAAACCAATTAACAGATTCATTATCAGGTACAGCATCTCTTCCCTTGCATGGA
ATCTAAAACAGAAATGTGTTAACATAGGAAAGGCCCTTTTGATTTCAAGGATGCAGATAAGCTT
AAGTTCTCTCACCTTGACATGCTTAATACCTTGCCTTGTCCATTCTGCAGGTGAGTAATATCGA
GTAGTATTTGTCAAATCAATCACCAAACCTATCTGAAAAGGGATAGGAAAAAATCGGTATAGTT
CTGTTAGCAAAAGGGGGCTGACTAGGAATGTACGCATACGAGATAATCCGTACCATGCCAATAA
TATGAACATTTCGAACAAGAGGAGGAGCAGTAAGTGCACATGTTTCACAAAAGAATTTCAGAAT
TGCAATCTTTTATTTATACAATAATATCAATTGAAAACAGCATCATCTTCGCAATTAACAAAAG
GGAAATAAGTACGTAGTACAACTACAAACTATAAAAATAATCAACAAGTCAATACTTACTTCAC
GACCAGCTTTTCTTTGTTTATTAACTACTTGTTTGGAAGAATATCTTTTCCCAGGAGGCACCAA
GTCATTGAATGTTTCATCAAGAGGAACCTTGGAAGGTATGATTTTGTCTATTGGCTCACCAAAT
GCTGGACAATTCATCCAACCTGAAGTAACATAGACAAAAGCAAGAATAGTCAAAATCCATTTTG
CGCATGCTCATAGCTAGAAATTGCCATATAAAGTTGATAACAGTTAGAAACATTTTCCAACATT
TCATACCATCAGGTGCCTCTTTTATTCGACCTCTACCAGCTCTGTTATAAGGTGCATAATCGTT
CCTAATCTGCTGAGAATGTAATCTTGAGCCTTCATCTTGTTGCTCTCTCTTTAATTTTTTGCGT
CTCTCTTCACGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.223505016
Functional Information
Coding potential Y
Potential coding position 6120422-6120754(-)
6120481-6123408(-)
Potential amino acid sequence MPPEREERRKKLKREQQDEGSRLHSQQIRNDYAPYNRAGRGRIKEAPDGWMNCPAFGEPIDKII
PSKVPLDETFNDLVPPGKRYSSKQVVNKQRKAGREIGLVIDLTNTTRYYSPAEWTRQGIKHVKI
PCKGRDAVPDNESVNWFVYEVMMFLDRQKQSKNPKYILVHCTHGHNRTGFMIIHYLMRTQVSCV
AEAINIFAKRRPPGIYKRDYIEALYSFYHEVPEHMITCPSTPEWKRSSDLDLNGEAKQDDDDEN
GDLAPVHVSIFRYSNLKLLPSNLVEN*(-)
MLYHMISKMLCVSYVIACWKCPLSVKRDAKN*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017