Detail information of BGIOSGA015056_circ_ig.1


General Information
CircRNA Name BGIOSGA015056_circ_ig.1
ID in PlantcircBase osi_circ_005471
Alias 4:19728696|19733550
Organism Oryza sativa ssp. indica
Position chr4: 19728696-19733550  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTACAGCAGGAATTGACTCTCTTTTGTAAACTTTTTACATGCTCTACGTAATGGTGATTGGAG
GAGCTTCTGGATTTTGAACCAAAAAAACAGAGAACCcgccattgatttgaagagcatgtcgagc
tgttccctctcaatgttcctgtgacacaaggatgcagaaccgcgtcatcacgacgtcaccccgg
gcaggcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGCCATTGATTTGAAGAGCATGTCGAGCTGTTCCCTCTCAATGTTCCTGTGACACAAGGATGCA
GAACCGCGTCATCACGACGTCACCCCGGGCAGGCGGACACCACATAAGCCACCTGTGTATGAAC
CGCGGGTCCCAGGGATTAGGTAGATGCCCACGTGGATCGCTGCTCTGCTGCCGCCACCAGCAAC
GCCACTGCACCAGCCACCGCCTCAACACTCGTCTGGAGTGGTGGACTTAGCCTAATCTTTGCAT
GGCCTGCCATAAAGAGACAAAGCATATGCATAAAAACTCTTCTTAAAGAAGAGAAGAGAATAGA
AAAAAGGAAAAAGATAGGCAGAAAGGTAGGGAAAAAGTGCAGTGTATATGAGTTTCAGCACCAT
GGAATGATTGATTATTATTTTTCTTCGTTATTTTTTTTGTTTTACAAAAGATTGAGCTGTTAGA
ATACTTACTGGAAGATACTGGTGATCAGAGGATTATACTTGTATAACTGCAATAAGATAAGCAT
CTTACCAACTTCTTTGGACTGGGGGAGTACAGTGGTTAGCATATCATTGAATGGCTCAACAACT
CAAAAAACTATATTAATATAAACCTCACTCTCGAATGACACGCTTTTATGCATAGCAAAGATAG
CCTTCTTATCAATTGGCCAACATCTTACTTAACGGTGTGGTATCTACCAAATTATTCAGCAGCT
TAGTATCACTATCATAAATCATTGTCATAATAGTAATACCTCCAAATTGAGCTCTGAAAATAAT
TTGAAATGATTGATGAATATCTATTTTGACGCGGCAGTTTGCAAACATGTGCATAGAATAGATG
CAGCAGCAAGGAACTCGAGTGGCTTCATCTCCAAGTGACGCTCTTTGTACTTTACCACAACTTC
ACTGAACTCTCTGAAACTTGTTGGGGCCGGTATATGCGACAATAATTGATAATAACTATGGTCA
AGAGGGATAAAGGAGCATGTTGGAGAAGGATGACGCTGGCATGACATCAGGAGGAAGACAGACA
TCATAGAAGAAATTTGTGCAGTAATGGCACTCGTAAAGCTCATTATTGGGCTGCAGGACACTTA
CCAGTAACATTTTTGTTGGAGATTTCAGAAAACAGTAGACGGTACTTCCATTGCTGTTCGACAT
ACTTTATTTTCTTGCCTTTTTTTTTCCTTCGCAACTTCTTTAGATAATGGAAGCATTTAAATCT
CCAGCCTCTATATCACTCGGCCAGAAGATTTTCATGGTAGTGTCCTAGCTTGCCAAATATCTGG
TGAAAGATATAGAAGTAAGTTCATCAGTGGAGGAAGTAACAAAAGGATGATTGTAGACTCTACA
GAAATCACTAAAGGATCAAAAAGAAATTATCCAAGCAATTAAAGTGAAAAAAACTTGGAGTAAC
GCAAACAAATTGAGATTACTGGTTCACTTCAGAATCAGATAAACATTTTTACTCTACAGAAATC
ACTAAAGGATCAATATAAGACTATTCTAAAATATGGTAACATCTGGTTAACATCCTTAATGAAA
ATGGAACATGATGCACTGAAGACTACCTTAATGCTGAAAAAGAAAAAAAAATTCGCTGATGCAT
TGAGCTGGGAGCATATTATGCCTTGAGCAAGCATGTCGGTAACATATCCATTGAATTTCAGTAG
TACGCAGCTATGCGTAGCAGCGTCCAAACAAATCTCAAGAGACAGTTTGCTGCATGATTGATTG
ATATTAACATGGTATCCAACACACATCAAATAAGAGAAAGAAAGTCAAAACTCCAGTCTAATCT
CCACCATAGTTTAATGACAGGATGAGGTTTCACATAACTTGGGCGTGCAACCTAAACAAGCTGG
ATGTGTGACTATGTCATCTCACCAATTACATCTCCTGACTTCAGATAAGAAACTCTAATGACTC
GATTATACGTTTCATTGACAGTTCTCATGAGCAAAGAGATGGCACTTTATAAATTAATGTACCT
AATGTAGCACAAAAGCAATATGTTATATTATGATCCATGCAAGAGCTAGTCTGCTATATATTAA
AAACTTTGGATGATCGATGTCTATGTAACCTGATATATCCAAGCTGAGTCAATGACCAAATGCA
TTCTCAAAAGGTTAACCTAATCAAGGACACCGAAATGAACATCATTGCTACAAAGGAACTGTCT
TTCTTGTTTCTTCAACTTTGTCGATAAAATATACCAAACATGATGAGGTGCCATGCATGCATGC
CTTGATGAGCTTAATTTGTTAGTTCCCATCAATCCTTCTCAATAGTTAGTACAGCTGCATGCAA
TATATTCCCTGAACATCGAGGCGCAGATACTACTGTCTAAATCCAACACCAGCCTTTAATTGCA
TAGCATCATCAGCTCCCTCAATAGAAAATGCAGCATGGGGGAGGAAAAGAAGAAAGCATGGCAC
TTAAGCTGCCAGGCTTCTGAAGGCACCATGCATGCCTCAGCCGCCTCAAAAACCTTTCAACGCT
CCTTGAATTGCACGTCTCTCTTTCTCCACACATTGCATACACGCATGCGGCCACTATAAGTAGC
ACCAAAGTCACCACATTAAGCAAGCACCTGCTCTCATCTTCTCCCCGTAGCCTTAGCTTCCACC
CGCCTGCCTAGTCTATCTACTTCTTCTGCCTTACACTTCACCTCAGCCATGGCTGGAGCTTCCA
ACCTTCCTCCCGGTTTCCACTTCTTCCCGTCAGATGAAGAGCTCATCATTCATTTCCTCCGCCG
CAAGGCCTCCCTCCTCCCTTGCCAACCTGACATCGTCCCTACTCTGATCTTGAATCTCTATGAT
CCATGGGAATTGAATGGTATGGGTCTAATATTTACCTCTATATGTTGTTGTTTTTGTCTTAGTC
ATAGCTGAGTGTTGATGTCAAACATTTTTACAGGTAAAGCACTCCAATCCGGTAACCAATGGTA
CTTCTTCAGTCATGCGACGCAGACTAGGACCTCGCCAAATGGGCACTGGAAACCCATTGCTGAT
GAGACAGTTATTAGTGGTGGTTGTAATGTTGGCCTGAAGAAGACCCTCATTTTCTTCATTGGGG
AGCCCTTTGAGGCGATCAAAACTAACTGGGTCATGCATGAGTACCACCTAATGGATGGGAGTAC
CAATTGCAGCAGTAGCAGTACTTCAAGCAGTTCAAGCAAGCGGTCCCACAAGAAAAAAGGTCAC
TCAGACACAGTGAGTGCTGTACTGCTATATGCGTGTTTATTTATCGTGTTTAGTACTATATATC
AATTGCATGACTATTTAACGTGGCTAACATATATGCATGCATGATCATTGCAGGAATCCAAGAA
CTGGGTGATATGCTGAGTGTTCGAATCGAGTTATGATTCACAAGTGAGCTTCCATGAGGAGGGC
ACGGAACTGTCATGCTTAGATGAGGTGTTTCTATCCCTAGACGACTATGATGAAGTCAGTTTTG
CCAAATAATTAGAACCTTTATAGGAGCTGTTAGTAGGTTAGGTCCTTCACCTATCAAAACATTT
GATCACAGTGATTCTCGCAAGAAAACTTAGTTTTATAAGATCAAATGGTTTGATAGCTGTTGAA
CCTAATGATCTAATAGACCAGATATGTAATTACTCATCTCCTCCCAGGAGTTGCATGCAACAAA
TTTGAGCTAGTTTTTAAGAACTATGATATTGCGAATATAGATTAATTGAGCATTTGTTGGTTTC
TTTTGAAAAAGAAAACACATTTCGGATAATCACTTACTCAACAGTGAGCAATAATTAAGCACTT
TTTTGGTGAATATGCAGAAGGCACATTTTTTTCGTTAAGGAAAAGACAAAGTTTTTTACACAGC
AACTAAGCGATGCATGCATTGATTTTGGCCTACATCCTCTCCCACTCATTTTCTTTTTATGTAT
TGCAAATAATGGTAGTTTGCCCACAAAGCAAAGGGGATCAGTTAGACGCTATTGAAGGCATGCA
TGCTTGGTGAAGTGCTGTCACCATGCTGTCCATGCACTGTTGAGTTGCAAAATCAGTTAACTGA
TACCCAGGTAGCCAGTAGCCACTGAAGTTTCTACTCTAAACTTTAATTTGTCTTTTGCAGTGTA
ATAATTCTAGAAGAAGTTAGTAATAGCTTTGGATTATAACTAGATAACTATGGATACTAAGTAT
AACTTTGCTTTTTTTCTTCTACTACTAGTCTACTACAAAGATTATTGACTTCTCAATCCAATCA
TGAAAACACAACAACATAATGAATATACTAACTACTGGAGAAGTTGTCAATGCCACCTCCTATA
ATGCGTTGCTGTTGACATGAAAATGGCCCAGCATATATAAGTGAACAAGAAAAATACGGATAAA
AGAAATAAAGGATTAATTATAACTACGATAGTGGTTTACATGTGTTACCTTTGAGTAGTCCTAA
TATTTTTTCTACCAATGAAGTACAAGTAGAGATGGGAAGAGAAAAACGAAACAAGGAAAGATGT
ATGCCTTATCTTCAAACGCTATATCTGCTATGCGCAGTGTGCTCACAATGTTGACTTGCTTATT
TGCCATATTTCTAAATCAGTTATGCGATCAACTCTGAATGCAGTTATTGCTTCAAACTAGAAAT
GTTCTAATTGGTTAGTTGTTCCGAACAGTAACAGGAACATATGATAAAAATCAATGTACAGTAA
GATACTAATTGGAATAAGTGGAAGTTGAGGAACTAACCATAGTGAAGCAACTGTCACTTGAATA
AGAAGCCGGGATCAATTGGATTACAGCAGGAATTGACTCTCTTTTGTAAACTTTTTACATGCTC
TACGTAATGGTGATTGGAGGAGCTTCTGGATTTTGAACCAAAAAAACAGAGAACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2095-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021