Plant Circular RNA Database

Detail information of Os03g0811500_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os03g0811500_circ_g.1
					
						ID in PlantcircBase
						osa_circ_022402
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr3: 33988852-33990219  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os03g0811500						
					
						Parent gene annotation
						
							Zinc finger, HIT-type domain containing protein. (Os03t0811500-0
1)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os03g0811500_circ_g.2 Os03g0811500_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						shoot
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os03t0811500-01:4

General Information
CircRNA Name	Os03g0811500_circ_g.1
ID in PlantcircBase	osa_circ_022402
Alias	NA
Organism	Oryza sativa
Position	chr3: 33988852-33990219 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	CIRCexplorer
Parent gene	Os03g0811500
Parent gene annotation	Zinc finger, HIT-type domain containing protein. (Os03t0811500-0 1)
Parent gene strand	-
Alternative splicing	Os03g0811500_circ_g.2 Os03g0811500_circ_g.3
Support reads	1
Tissues	shoot
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os03t0811500-01:4

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							CAAGTGTTCGCTTCTTAGGAATCCGTTTGCTCTTGCGAACAAGGTCTGAAGATGGTGAAACATC
ATGCTTATCTTGGTGATGTTTGTGCCCACCAGAATCctgataggcttggagtcaaatatgctag
ggaggcccatcttatcaggaaatgtgacaacagttccttctggccccatgacacattggatgca
gttccttc

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 851
Transcript exons: 33988852-33988979,33989068-33989148,33989223-33989323,33
989679-33990219
CTGATAGGCTTGGAGTCAAATATGCTAGGGAGGCCCATCTTATCAGGAAATGTGACAACAGTTC
CTTCTGGCCCCATGACACATTGGATGCAGTTCCTTCTATATTCTTCTGTTTTTTCTTGCTTTTC
CTTCTCATCCCGCTCTTTCTGTTTCCTCTCCTCTTTTTTCTTCTCAATATCAATACCCAGGATT
TTCCTCACTGCTTCGGCCTGTTGTTCCCTCTCTGCCTTCTCAACTTGCAATTTACGCCTCTGAG
CCGCTTCTGCCTTTTTGGCTTGTGCCTCCACTTCAGAAGCCTTATCCTTTTGCCTTCTCGATGA
AGCAGTTGGTAATCCATCAGGAAATTCAATCAGAGTTTCACCATTGCCACCTCTGCCTTGAAGA
GCACGCTGCCTGGTTATAAGGCCAGTAGTTTCATTCTTTACATCTGAATGTGAATCAGCTTCAC
TTAGTCTCTTCTTTGGCTCATCCATCTCAGGTTCCTCTTCAATAAAATCATCGCTATCCACCAG
TTTCAACTTCTTCCTACCATCCCTGCCAGATCGGTACATAGTGAAGTCTTCGTCCACTTCATAT
GGAAGGCTCTTGTTTTTGGAAACCTTTGACAGCCTCTTTTTCTTAATATCATCTTCAAGAGATT
CATCATACTCTCCAGCATGGTCAGTAGCTATAGATTGTTCTGGCACAACCTTAGCTATCTTAAA
TTTTACAAGATAGCCTGATCCACCATCTTCATCACCAGAATCACCATCAAGTGTTCGCTTCTTA
GGAATCCGTTTGCTCTTGCGAACAAGGTCTGAAGATGGTGAAACATCATGCTTATCTTGGTGAT
GTTTGTGCCCACCAGAATC
						
					

						Genomic sequence
						
							CTGATAGGCTTGGAGTCAAATATGCTAGGGAGGCCCATCTTATCAGGAAATGTGACAACAGTTC
CTTCTGGCCCCATGACACATTGGATGCAGTTCCTTCTATATTCTTCTGTTTTTTCTTGCTTTTC
CTGGAAAAAAAGGTGAGAGGAAGGGTAAAATGAGTCTACTGTACCATGAACAGAAATGTAGCAA
CAATAAAAACTTATGGCATAGTACCTTCTCATCCCGCTCTTTCTGTTTCCTCTCCTCTTTTTTC
TTCTCAATATCAATACCCAGGATTTTCCTCACTGCTTCGGCCTGTACAGTAGGAGCTAGTAAGC
TTGGCTACGCAAAAGGCGAAAAACTAGGAAACTCTTAGGGACTAGGCTAACCTGTTGTTCCCTC
TCTGCCTTCTCAACTTGCAATTTACGCCTCTGAGCCGCTTCTGCCTTTTTGGCTTGTGCCTCCA
CTTCAGAAGCCTTATCCTTTTGCCCTGTAGTAGTAATTAACAATGGCATTTAGTATCAGATCTA
AGGCAACACATTAATGTCAATAAATAGCTACTCCCTCCGGACTGATAATATTAGTCGTTTTTAA
CAAGGGTAAAGTCAAACTTTAAAATCTTTGACTACAAATAATTTCTAAAATATTTATCTTAAAA
ATATGAAAATCATATGTGTAGATTAGCCTTAAAAAGTACTTCAATAAAATTATATATTTGTTGA
TATTTCTATATATATTATAATAGAAAATAGTTGTCAAAGTTACTTTTTGGAGACCGTGCTCTTG
TCCAAAACGACAAGTATTATCAACCCGGAGGGAGTACATATATAAGCTAGAGATTATACTTCTC
GATGAAGCAGTTGGTAATCCATCAGGAAATTCAATCAGAGTTTCACCATTGCCACCTCTGCCTT
GAAGAGCACGCTGCCTGGTTATAAGGCCAGTAGTTTCATTCTTTACATCTGAATGTGAATCAGC
TTCACTTAGTCTCTTCTTTGGCTCATCCATCTCAGGTTCCTCTTCAATAAAATCATCGCTATCC
ACCAGTTTCAACTTCTTCCTACCATCCCTGCCAGATCGGTACATAGTGAAGTCTTCGTCCACTT
CATATGGAAGGCTCTTGTTTTTGGAAACCTTTGACAGCCTCTTTTTCTTAATATCATCTTCAAG
AGATTCATCATACTCTCCAGCATGGTCAGTAGCTATAGATTGTTCTGGCACAACCTTAGCTATC
TTAAATTTTACAAGATAGCCTGATCCACCATCTTCATCACCAGAATCACCATCAAGTGTTCGCT
TCTTAGGAATCCGTTTGCTCTTGCGAACAAGGTCTGAAGATGGTGAAACATCATGCTTATCTTG
GTGATGTTTGTGCCCACCAGAATC
						
					

			
		

Sequences
Splice junction sequence	CAAGTGTTCGCTTCTTAGGAATCCGTTTGCTCTTGCGAACAAGGTCTGAAGATGGTGAAACATC ATGCTTATCTTGGTGATGTTTGTGCCCACCAGAATCctgataggcttggagtcaaatatgctag ggaggcccatcttatcaggaaatgtgacaacagttccttctggccccatgacacattggatgca gttccttc
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 851 Transcript exons: 33988852-33988979,33989068-33989148,33989223-33989323,33 989679-33990219 CTGATAGGCTTGGAGTCAAATATGCTAGGGAGGCCCATCTTATCAGGAAATGTGACAACAGTTC CTTCTGGCCCCATGACACATTGGATGCAGTTCCTTCTATATTCTTCTGTTTTTTCTTGCTTTTC CTTCTCATCCCGCTCTTTCTGTTTCCTCTCCTCTTTTTTCTTCTCAATATCAATACCCAGGATT TTCCTCACTGCTTCGGCCTGTTGTTCCCTCTCTGCCTTCTCAACTTGCAATTTACGCCTCTGAG CCGCTTCTGCCTTTTTGGCTTGTGCCTCCACTTCAGAAGCCTTATCCTTTTGCCTTCTCGATGA AGCAGTTGGTAATCCATCAGGAAATTCAATCAGAGTTTCACCATTGCCACCTCTGCCTTGAAGA GCACGCTGCCTGGTTATAAGGCCAGTAGTTTCATTCTTTACATCTGAATGTGAATCAGCTTCAC TTAGTCTCTTCTTTGGCTCATCCATCTCAGGTTCCTCTTCAATAAAATCATCGCTATCCACCAG TTTCAACTTCTTCCTACCATCCCTGCCAGATCGGTACATAGTGAAGTCTTCGTCCACTTCATAT GGAAGGCTCTTGTTTTTGGAAACCTTTGACAGCCTCTTTTTCTTAATATCATCTTCAAGAGATT CATCATACTCTCCAGCATGGTCAGTAGCTATAGATTGTTCTGGCACAACCTTAGCTATCTTAAA TTTTACAAGATAGCCTGATCCACCATCTTCATCACCAGAATCACCATCAAGTGTTCGCTTCTTA GGAATCCGTTTGCTCTTGCGAACAAGGTCTGAAGATGGTGAAACATCATGCTTATCTTGGTGAT GTTTGTGCCCACCAGAATC
Genomic sequence	CTGATAGGCTTGGAGTCAAATATGCTAGGGAGGCCCATCTTATCAGGAAATGTGACAACAGTTC CTTCTGGCCCCATGACACATTGGATGCAGTTCCTTCTATATTCTTCTGTTTTTTCTTGCTTTTC CTGGAAAAAAAGGTGAGAGGAAGGGTAAAATGAGTCTACTGTACCATGAACAGAAATGTAGCAA CAATAAAAACTTATGGCATAGTACCTTCTCATCCCGCTCTTTCTGTTTCCTCTCCTCTTTTTTC TTCTCAATATCAATACCCAGGATTTTCCTCACTGCTTCGGCCTGTACAGTAGGAGCTAGTAAGC TTGGCTACGCAAAAGGCGAAAAACTAGGAAACTCTTAGGGACTAGGCTAACCTGTTGTTCCCTC TCTGCCTTCTCAACTTGCAATTTACGCCTCTGAGCCGCTTCTGCCTTTTTGGCTTGTGCCTCCA CTTCAGAAGCCTTATCCTTTTGCCCTGTAGTAGTAATTAACAATGGCATTTAGTATCAGATCTA AGGCAACACATTAATGTCAATAAATAGCTACTCCCTCCGGACTGATAATATTAGTCGTTTTTAA CAAGGGTAAAGTCAAACTTTAAAATCTTTGACTACAAATAATTTCTAAAATATTTATCTTAAAA ATATGAAAATCATATGTGTAGATTAGCCTTAAAAAGTACTTCAATAAAATTATATATTTGTTGA TATTTCTATATATATTATAATAGAAAATAGTTGTCAAAGTTACTTTTTGGAGACCGTGCTCTTG TCCAAAACGACAAGTATTATCAACCCGGAGGGAGTACATATATAAGCTAGAGATTATACTTCTC GATGAAGCAGTTGGTAATCCATCAGGAAATTCAATCAGAGTTTCACCATTGCCACCTCTGCCTT GAAGAGCACGCTGCCTGGTTATAAGGCCAGTAGTTTCATTCTTTACATCTGAATGTGAATCAGC TTCACTTAGTCTCTTCTTTGGCTCATCCATCTCAGGTTCCTCTTCAATAAAATCATCGCTATCC ACCAGTTTCAACTTCTTCCTACCATCCCTGCCAGATCGGTACATAGTGAAGTCTTCGTCCACTT CATATGGAAGGCTCTTGTTTTTGGAAACCTTTGACAGCCTCTTTTTCTTAATATCATCTTCAAG AGATTCATCATACTCTCCAGCATGGTCAGTAGCTATAGATTGTTCTGGCACAACCTTAGCTATC TTAAATTTTACAAGATAGCCTGATCCACCATCTTCATCACCAGAATCACCATCAAGTGTTCGCT TCTTAGGAATCCGTTTGCTCTTGCGAACAAGGTCTGAAGATGGTGAAACATCATGCTTATCTTG GTGATGTTTGTGCCCACCAGAATC

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.23249718

Conservation Information
Conserved circRNAs	NA
PMCS	0.23249718

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							33990172-33989685(+)
33990185-33989265(+)
33989921-33990077(-)
33989077-33990190(-)
						
						Potential amino acid sequence
						
							MVKHHAYLGDVCAHQNPDRLGVKYAREAHLIRKCDNSSFWPHDTLDAVPSIFFCFFLLFLLIPL
FLFPLLFFLLNINTQDFPHCFGLLFPLCLLNLQFTPLSRFCLFGLCLHFRSLILLPSR*(+)
MLILVMFVPTRILIGLESNMLGRPILSGNVTTVPSGPMTHWMQFLLYSSVFSCFSFSSRSFCFL
SSFFFSISIPRIFLTASACCSLSAFSTCNLRL*(+)
MYRSGRDGRKKLKLVDSDDFIEEEPEMDEPKKRLSEADSHSDVKNETTGLITRQRALQGRGGNG
ETLIEFPDGLPTASSRRQKDKASEVEAQAKKAEAAQRRKLQVEKAEREQQAEAVRKILGIDIEK
KKEERKQKERDEKEKQEKTEEYRRNCIQCVMGPEGTVVTFPDKMGLPSIFDSKPIRILVGTNIT
KISMMFHHLQTLFARANGFLRSEHLMVILVMKMVDQAIL*(-)
MRRKSKKKQKNIEGTASNVSWGQKELLSHFLIRWASLAYLTPSLSGFWWAQTSPR*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	33990172-33989685(+) 33990185-33989265(+) 33989921-33990077(-) 33989077-33990190(-)
Potential amino acid sequence	MVKHHAYLGDVCAHQNPDRLGVKYAREAHLIRKCDNSSFWPHDTLDAVPSIFFCFFLLFLLIPL FLFPLLFFLLNINTQDFPHCFGLLFPLCLLNLQFTPLSRFCLFGLCLHFRSLILLPSR(+) MLILVMFVPTRILIGLESNMLGRPILSGNVTTVPSGPMTHWMQFLLYSSVFSCFSFSSRSFCFL SSFFFSISIPRIFLTASACCSLSAFSTCNLRL(+) MYRSGRDGRKKLKLVDSDDFIEEEPEMDEPKKRLSEADSHSDVKNETTGLITRQRALQGRGGNG ETLIEFPDGLPTASSRRQKDKASEVEAQAKKAEAAQRRKLQVEKAEREQQAEAVRKILGIDIEK KKEERKQKERDEKEKQEKTEEYRRNCIQCVMGPEGTVVTFPDKMGLPSIFDSKPIRILVGTNIT KISMMFHHLQTLFARANGFLRSEHLMVILVMKMVDQAIL(-) MRRKSKKKQKNIEGTASNVSWGQKELLSHFLIRWASLAYLTPSLSGFWWAQTSPR(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os03g0811500_circ_g.1

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