Detail information of Zm00001d030572_circ_g.2


General Information
CircRNA Name Zm00001d030572_circ_g.2
ID in PlantcircBase zma_circ_006640
Alias Zm01circ00104
Organism Zea mays
Position chr1: 144844166-144848709  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method CIRI2
Parent gene Zm00001d030572
Parent gene annotation Transcription factor TFIIE alpha subunit
Parent gene strand +
Alternative splicing Zm00001d030572_circ_g.1 Zm00001d030572_circ_ag.1 Zm00001d030573_circ_g.1 Zm00001d030573_circ_g.2
Support reads NA
Tissues leaf, endosperm
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d030572_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGCTGCAGCTGCTAATGATGGTCAACCAATTGCTAAGGAGGGAGAAGAGAAAGTAAAGCTG
CACACACATTCATACTGTTGCTTGGATTATGCTCAGacgaccgtgggttcgggaggaagatttg
gctaaagcattgaagctccactcgaaacagctgcgtcgcattctccgtttctttgaagaggaga
aactagtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACGACCGTGGGTTCGGGAGGAAGATTTGGCTAAAGCATTGAAGCTCCACTCGAAACAGCTGCGT
CGCATTCTCCGTTTCTTTGAAGAGGAGAAACTAGTCACGAGGGATCATCGAAAGGAGGTTAGTT
TTATTTGTGTTTTGATTTGTTGTTGAACATGCATAGCTGCAACTCCCTTTTGTAGATATGAGCA
AGTTCCAACCACCAACTGGTGGCAAAATGTGTATGTTGTCTATTTATTTAAATGACGTCAAGCT
GTATGGAAGATAATTCAACATTTTCAAGCCATGGAAATGTGTGTGACACTCAACAAGTAACTAG
GTATGTAGGTGGAAAGAAAATTATTCATTTATAGTCAAGGTTTTAAAGTCGGGCGACTAGTCGA
CGACTAGTCGAGAAGTCGATGCAAAGGTAAGGTGATAGTCGATCTGAACGACTCGACTTTCTCT
ACTAGTCGCTCGACTCGTTGACTAGTCACGACTAGTCGCAGCAGTTGAGTCGGGCGACTTATTT
GGGCCTAGGTATAAAAAAGTGAGCCCACCCAGCCATCTCAACCCTAGTAGGTAGGATGCTAATG
CACAAGTTTTCTACCTTATTTATCTATGGATATGGAATGAGTCATGACTTGATGAGCAGTGGCG
AAGCCAGGATTTCTCTAAGTATAGGGCTGGATATAACACTAAAAATTATTCATACCGGCTAAAA
AATTTAAATCGAAAAATACATAGATAATGGCACACATGAACTTTATTTGGACACAATAATTGTA
ATTAAAATAAAATTGACTTAAACAAACGGTTAACTAATTAAAAATAATAATAGATCTCCATCTC
TATAACCAATTTATCAATTGTTTGGGTGGCTTTCATTAGCAAGACAATACTTGTTTACATCACC
TGCAGAAAGCTTAAAGAAGAAAAAAGTGATGTTTGGTTTATTTGAAGTTGAATGTTCTCAATCC
TCAAACAGATTTTAGCCGGAGATTTCAGCAAACCTGATTTCAGCAAATCTTCTGAAGTATCCAT
ATACAATACAATATCTCTAAATACTACACACTTGGCTGACTGCCTACTGGCTGTAGTCCACAGC
CGCTGGGTGCCTGCTTGCCATGCTAACTGCGCCCGCCTGCACGCCGTGAGAATTATCGCGCTAA
ACCGCGCGTCGTGCGGCTGCTTGCCTGCCTGTACGCCATGCCTTCTTGCCACGCCGCTCGTGGC
TACTCTTCTAACCCTAGCTGGCTAGTCCAAGAGTAGGGCCCAGGCCCTAGTGGTCATAGGCCTA
TCTCCGCCCCTGTTGATGAGGACCAAGACAAATGGTAGAGATCTTGTGAGGCATGCAACTACTC
TGTTTGCAACATCCTTCCTTACATTGGCTAATATGTGGAAACAAAGACAAGGATTGAAAGTTCT
CTTTGTTAGTAGTGAATGGTGTGACAACAAAATGAAGAACATTGAAGTAGGAAAAGCATGTGTT
GTTTGTCACTGTGCATTTTGGCAAGAAGTAGAAGATTGCATGAGAGCTTCACAACATATTCTAA
TATTCTTGAGGATAGTTGATGGTGATCAGAGACCAACAATGGCTGAAATGTGGGCTGCCATGGA
CCATGAAAAAAAGAGCATCAAAAAAGCTTTGGAGCACAAAGAAAGAATAATAGATGAAGTAATT
TCTATTGTTGCTACTTGCTAGCAAGTTTTGGTCTTCCTGCTATTATGAGTAGGGTCTAGATTGT
GGTCAAGTGTTCGGTTTGCCCTATGGGCATTGTACTTTGGTCCTCTTGGACCTTTTTCCTCTCT
TAATATAATGACGTGCAGTCCTCCTGCGCGTTCGAGGAAAAAAAATTCTATTGTTGATAAGAGG
TGGGACAGTCAGATGGATACCAATCTGTATAGAGCAACATTGTTTTTGAATCCAAACAAGTTCT
TCGAAACCAGAGAGAATAATAGAAGACTTGCTACAAGACTATATTCTATCCTAGGGTAAGCCCA
CTACCTCTCCTTCTATCCTAAGCCTCTCCATCTGTCTCCACAGTCGACAACCACACGACTCCTC
AGCCACACGACTCCATCCTCCCAACTGTCGCTCCCAGCCGCCACTAGTGTTTCTCTCTCCCCGC
TGTCTCCCTCTCTCCTGTGTGTCGCCGCTATGCTGGAGCCGCTGCACGCTGCTGTTGGAGGAGC
CGTCGCCGCGCCATGTTGGAGGAGCCGCCATCACGCCATGGAGGAGCCACCGCGTCACTGGTAG
AGTTACCGACGGCCTCTCCCACTCGCCTTATGTGCCGGAGTAAGGCGAGCAGGACACCTTATGT
CGTCGGGGCGCCTTACCGCCTAGGCGACGCTTTAACAACTATATGACAAAATATCAAGGAACGT
TATGTGGTGGGCTTTGGGGCAAACATAACGTTCCAATGAAGTATGTCGTGACTCATTAAGGACA
TAAACACCAATGTCGTGACTAGTGTCCGAACAAGTGGATACATGAATGACTTCTCGATTAGAAT
AGGACTACATCAGGGATCAGCTTTGAGTCCTTACCTTTTTGCCTTGGTAACGGATAAGGTCATA
AGGGACATAAAGGGGATATCCCTTGGTGCATGCCTTTTGCAGACGATGTAATGCTAGTTGATGA
AAGTCGGGTAGGAGTAAATAGGAAACTAGAGTTGTGGCCTGAAAGAGTCCAAAGGTTTTAGACT
CTGTAGAAGTAAGACATAATATATGAGATGTGATTTAGGCACAACACATGTGGAAGGAGATGTT
AGTTTGGAAGGTTAAGTAGTGCCTAGGATCAATGCTATAGCGAGAGGCGGGGATATTGATGAAG
ATGTTAGCCATAGAATCAAAGCAGGGTGGATGAAGTGGCGCCAAGCATCTGGCGTTCTATATTA
CAAGAGGGTACCACAGAAGATAAAAAGCAAGTTTTATAGGACAATAATTAGACTCATTATGTTG
TATGATGCAAAATGTTGGCCCACAAAAAGACGACATGTTCAGATGATAAGTGTTGTAGAAATGC
GTATGCAGTGTTGGATTTGTGGCCATACAAGAAGGGATCGAGTCTAGAATGGTGATAGGTTAGG
GGTAGCACCAATCGAAGAAAAGCTTGTCCAACACCGGTTGAGATGGTTTGGACATGTCCAATGG
AGACCTCCAAAGGCGCCAATGCGTTAGTGGGATCCTAAGGCATGATAGTAACGAGAAGAGAGGA
AGACCGAAGTTGATATGGGATGAGGCAGTATAAGGAGACTTGAAAGGATGGATATACCCAATGA
TTTAACCTTGAATAGGAGTGTATGGAAAACAACTATCCATGTGCCTGAACCATGACTTGTGGGT
TTGTTGGGTTTTTTAACTCTAGCCTACCTAAACTTGATTGGGATAAAAGGCTTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGATAGTTATCACTTATTTCAAGTCGGGCGACCAGCTGGTCGTCCCAG
AGGACCGACCAGGCGCCTAATCGCGATTAGGGCGACGATTAGGACGCCTAATCGGTCCTGGTCG
ACCTCAGGTCGTCTCCTAATCGTCCTATACAATTTCTGGACATATATATGTATATAGCTATATA
TAACAAGCAATACTGCAATAGCCAATAGGCTAGGCACTATATAAGTCTGAAACTCTGAACTGAG
TCTGAAATTACAAGCAGTGAAGCAGCAGAAATGAAAGTCTGAAATTGTAACTAGAGACTGCAGA
ATGCACTAGTGCTGTGATGGTAAGAACCAAGAAGTCAAGAACAACTGACCGCAGAGTGTAGACA
TACTGATAATAAGATAGAAAAGGGTAAGAAGGAAGGGACCAACACCAGTCATCAGTTCCTCTTC
GTCACTGCTCACTGGTGTTGGTCTGGAGACAACGCTGGTGGAGTCCTAGAGAGCCGGCGCCCGG
TGTATTGGAGCAGCCGCCGGTGAATGCACTGGACAAATGACGGCAGTAGAGGGCAGACAATGGG
CAGGGGCGCAGGCAGGGTTTGGGTTACGACAGCGCTAGGGTTTCGGCAGGGGAGGAAAGCGGTT
TATATTGCTTACTGTAGATGGGCCAAAAAAGGATGAAGCCCAATAGTAAACCCTAGCCGCCACT
GGACGACCAGAAATCAACTAATCGGACGCCTAATCGGGCGATCTGGACGCTTAATCGACGATCT
GGACGCTTAATCGACGTTCTGGACGACCAGAACGTCTGATCGCGTCGTTCGGCTAATCGGCCAC
TTACAGGTGACCAGCCCGACTAATCGCGATTAGTCGGACGACTTGAAAACAGAGATAGTTATCC
AACATGAAGTTGGTGGCTGGCCGCAGAAATTTGTATCTAACAATTACTTGAATAGTTACATTTC
TCGCTATCTGGAAGTGTGCCAGTGAATATCTTATGATTTTGGTATTTTCTTTGTTCTTTGGTGC
TGCAGTCAGCAAAAAACGCAAAAGCACATAATGCTGCAGCTGCTAATGATGGTCAACCAATTGC
TAAGGAGGGAGAAGAGAAAGTAAAGCTGCACACACATTCATACTGTTGCTTGGATTATGCTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.140734
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Han et al., 2020