Detail information of AT2G11000_circ_g.2


General Information
CircRNA Name AT2G11000_circ_g.2
ID in PlantcircBase ath_circ_013152
Alias NA
Organism Arabidpsis thaliana
Position chr2: 4342347-4342627  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G11000
Parent gene annotation MAK10 homologue
Parent gene strand -
Alternative splicing AT2G11000_circ_g.1
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G11000.3:2
AT2G11000.1:2
AT2G11000.4:2
AT2G11000.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGACAGGTCTGACATTTGAGAAACAATACCCATAGACTAATCCGATCTTCCCGAGCCATGTCCC
TAGAATACTCCTTATTCCTCTTTGCTTTTCTTTCCTctcattttcggtattaaaaggtccttga
ctctttaaagacattccttcatttctcaaagctgcaatcatctacgggtaaatacacaaggttt
ggtcaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCATTTTCGGTATTAAAAGGTCCTTGACTCTTTAAAGACATTCCTTCATTTCTCAAAGCTGCA
ATCATCTACGGGTAAATACACAAGGTTTGGTCAGGTTTAGAGTACTTGATATCAGCAATAGAAG
GAGCTGGAAACCAAGAGATTGAAGACAAAATTACCACTGTGAGGCCTTGTGCAAGACAGGTCTG
ACATTTGAGAAACAATACCCATAGACTAATCCGATCTTCCCGAGCCATGTCCCTAGAATACTCC
TTATTCCTCTTTGCTTTTCTTTCCT
Conservation Information
Conserved circRNAs NA
PMCS 0.136418623
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017