Detail information of Zm00001d006008_circ_g.6


General Information
CircRNA Name Zm00001d006008_circ_g.6
ID in PlantcircBase zma_circ_000166
Alias NA
Organism Zea mays
Position chr2: 195181996-195182097  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Zm00001d006008
Parent gene annotation Heat shock protein 90-2
Parent gene strand +
Alternative splicing Zm00001d006008_circ_g.1 Zm00001d006008_circ_g.2 Zm00001d006008_circ_g.3 Zm00001d006008_circ_g.4 Zm00001d006008_circ_g.5 Zm00001d006008_circ_g.7 Zm00001d006008_circ_g.8 Zm00001d006008_circ_g.9 Zm00001d006008_circ_g.10
Support reads 3
Tissues shoot
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Zm00001d006008_T005:1
Zm00001d006008_T003:1
Zm00001d006008_T001:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGAAGAAGAGGAAGGAGGAGCTGAAGGAGAAGTTTGAGGGGCTGTGCAAGaagcttgtctctg
ccaccaaggagggtctgaagcttgatgagactgaggac
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 102
Transcript exons: 195181996-195182097
AAGCTTGTCTCTGCCACCAAGGAGGGTCTGAAGCTTGATGAGACTGAGGACGAGAAGAAGAGGA
AGGAGGAGCTGAAGGAGAAGTTTGAGGGGCTGTGCAAG

Genomic sequence AAGCTTGTCTCTGCCACCAAGGAGGGTCTGAAGCTTGATGAGACTGAGGACGAGAAGAAGAGGA
AGGAGGAGCTGAAGGAGAAGTTTGAGGGGCTGTGCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.42187977
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015