Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d017298_circ_g.1 |
| ID in PlantcircBase | zma_circ_008760 |
| Alias | zma_circ_0001960 |
| Organism | Zea mays |
| Position | chr5: 192057631-192062241 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d017298 |
| Parent gene annotation |
DUF3755 family protein |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Zm00001d017298_T006:4 Zm00001d017298_T011:7 Zm00001d017298_T002:7 Zm00001d017298_T009:5 Zm00001d017298_T010:7 Zm00001d017298_T003:7 Zm00001d017298_T004:7 Zm00001d017298_T005:3 Zm00001d017298_T008:7 Zm00001d017298_T013:5 Zm00001d017298_T007:7 Zm00001d017298_T001:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.062649452 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
192061952-192062235(-) |
| Potential amino acid sequence |
MQMSTGSNHYGVFPHPFCNQHVVSFQTSSITSGSGAIPVCLDTSSGMNGDMAMLNTTSSTIVST GSPNMVADSSCQNLKYSAPLAVEWSYPELQLLNDGLNKYANEPGIMKYIKIAATLPDKTVRDVA MRCQWMAARKEATRRRKPEERYLGKKIKDRKDKMAQPSSWGTNPPVQAEMRSSSFMPRNAKHNG FLSGDSQIDHEMLNILEENARLLNQIEVNILTSQAHNNINLFHHIRRNINGLLQSMCQIPGIMS KMPPLPVSVDERLASYILPRAHTEV*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |