Detail information of Zm00001d017298_circ_g.1


General Information
CircRNA Name Zm00001d017298_circ_g.1
ID in PlantcircBase zma_circ_008760
Alias zma_circ_0001960
Organism Zea mays
Position chr5: 192057631-192062241  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d017298
Parent gene annotation DUF3755 family protein
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d017298_T006:4
Zm00001d017298_T011:7
Zm00001d017298_T002:7
Zm00001d017298_T009:5
Zm00001d017298_T010:7
Zm00001d017298_T003:7
Zm00001d017298_T004:7
Zm00001d017298_T005:3
Zm00001d017298_T008:7
Zm00001d017298_T013:5
Zm00001d017298_T007:7
Zm00001d017298_T001:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATATCATCCAAACTATGATGATAATTTGCAAAGCTTGACTGAACAAATCTTTGTTCTAACAAA
AGTACTCAGTTCTGAGAGACTTCCACATTAGACTTCcgtatgagcacgagggagtatgtagcta
gctagcctttcatccacagaaacaggcaatgggggcatcttgctcattattccgggaatctggc
acatgctg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTATGAGCACGAGGGAGTATGTAGCTAGCTAGCCTTTCATCCACAGAAACAGGCAATGGGGGC
ATCTTGCTCATTATTCCGGGAATCTGGCACATGCTGTTCATTAAGGAGAGCATCAAATCAGAGA
AAAGGCATCCATATAAACACGTACAAACTTTACCATTTTGAGTCAATTTTAGTACAAAATGTCG
TAAACTCTACCTTTGTAGAAGACCATTAATATTCCTTCTTATGTGATGGAAAAGATTAATGTTG
TTATGAGCCTGAAAAGTATTATCAAGAGGAATTGAAAATTACTCCTGCACAGCAAAATGTTCCT
GCTTCTCATGAAAATTTTATCACAAAAATATGCTCCAAACAGATGCTGGAATGTTTTTTCTCTC
TTCAACGAGAAGTTGTTATGAGCACAGATCTGGATGGCATAAGCTGTTAACCTTTATTGCGGTG
TGCTATAATTTTGTTGCAAACTAAATTAAGAGTCGAAGAAGACACAAATTTAATATAACTAATG
CCTTGAACTAAATCAGCTAAATTAAAAGATGCATTGTAAAAGAAAGAACAAAATACCAACCTGA
GATGTTAAAATATTTACTTCTATTTGATTGAGTAGTCGAGCATTTTCTTCCAATATATTTAGCA
TTTCATGATCAATTTGAGAGTCTGCATAAAGGAACGCAAACATGTCAAACTTTGTAAAGGATTG
AACGGTCTGAAGTAATCAAGACACTGTTTGTGTCAAAGTTTTGGCAGATAGGGAAACTTCATAT
ACATATAGTCGAAACTAAGAGGACTCTGGAACTTTACAATATATAAATATCCTCAAATATGCTG
AAAAGTGAGGTGATGTTTTATGGAATTAAAACTTCAGAGCAGAATCACCAACAATGCTATATGG
CTAAATGCTAATAAGGTTTCGATTTTTAAGGAATACAACCTCTATCAAGGAAAGAATACAATTC
TAGGAGCATTCTTGGTTAAAGTGCCTAAAATTTGACCAGATACATAGATAAAAATATTAATATT
TATGACGTCAAGTATATTATTAAATATATCTCATGATAAATCTGATGGCACTTATCTAATATCA
TAACTATTTATCCTTTTTTATATATAGTTAGTCAAACATAAGATACTTTAACTTTGTACTGTGC
TAGAATTGCATTCTTTTCTAGACGGAGTGGGTAGCATTTTAGTATTCCTTACAACACAATATTT
CATTGTTGCCAAAAGCAATGGTGAACGCTATATTATACATAATGAATTACTCGATCACTCTTCA
AGTAACCTACCAACCTCCAGAGAGAAATCCATTGTGTTTGGCGTTACGAGGCATAAAAGAGGAA
GATCTCATCTCAGCCTGAACAGGAGGATTGGTACCCCATGATGATGGCTGAGCCATTTTGTCCT
GAAGAAACAACCTTAATTAGAGCCATTTAGAAATGGACTCATGGATACTAGATTACTAGTAAAA
TTATAAGGTTGCATCATGCACATTTCTCACTCAGACTGCATTTTAACAGTATCACATTTTATAA
TGTATCTTCCTGTTTCGATTTTTTTATTAAGAAAGTTAAATCATGTTGAGCAGATGCCACCGGA
GTATTAAATGTTAAGTTCATTTCATCATTTCCACAAACACCAAAATGTGTACATGTATGGAGCC
ATGGATTGTGGTCTGTTCCAAAATATATTTGACATAACAAAGAAGTTCAAATTTAATGTTTATC
CGGAGTTAGAACAGTAATTTCTTCAGGTAGAGTATGCTGGTGCTAACAAGAGGCAACACTGTTA
TAAAAAATGAAACTAGGAGTACCTTCCTATCTTTTATCTTTTTCCCAAGATAGCGTTCTTCAGG
TTTCCGTCGTCTTGTAGCTTCTTTTCTCTAGAAGCAAATATAATTATCATTACCAATGAAATTG
AAAAGGAAAGAGACATATGATGAACAAATTCCCACAGAAAATCACTATTTAATCATTATTAACA
ACGAAGATGAAAAATAAAAATTCCCTTGGAAAGCATAAGTAGGATACAACTGACTATTACTCAA
GGTAAAAAGGTGGATCAACAGGCCAATGTTTTGTTTGCCATCTAAAACAAACTAAAAATATTTC
TTACTTTCTTGACATTGAAAAAAGAGACGTGGAATTATTCTTATTTATTGCATTGATATTGTCA
GCTTCCTATAGTCCAATGGTGTTTACTGATCGATCAAATCAAATATGCCATCTTAGTTGTACTA
ACTGAAAAAATGTAAAAAATAAATAAATCACAACTTTTCGTATACATACTCTGAAGTCTCAACA
TGAAACAAGAACAAACCAACTTTAGGCTGCAAACCTTATTGTTAGTAATGTCAAAAGCAGAGAC
TTTTTTCTCAAAACACAGGAGAGACGCAGAGACCTCTCAGCCTTACTTATATTATTCTAGTACA
CAGAGAAATACAAAGGCAATTCTATGATGCAACAGATCAAAAGGATACTCAGGAGGACCAGCTC
AGATCACACTAACTTTAATGTTAATAATAGACTATTATAGCATTTTTATAGATGTGGACAAACA
AGTGTATCTTCAGCATGATCTACTTTCACATACGCAGCACAGGTTTAGTGGAATTATGGTGACA
TCATCTTGACAAGTCACACAAGTATAAACTACTGTTAATCTCCATCCATAAGCTGATGTGGGAC
CACATATTCCTTTCAAATGTATAATCTAGAGTGGATAAACATATTGCATGGCTGTAGTATCTAT
CAGAGTTCAGGTTTATGAAATGTTAGCTACCTCTGAAGTTTTTGTTGAACTGTGGATTAAATAC
AGCAGATGAGGAAATGGAATTCAGACACAGTAATAAATCAAAGAAATCGGGGACTAACCGCTGC
CATCCATTGACATCTCATGGCAACATCTCTAACTGTCTTGTCTGGTAACGTGGCTGCTATCTTT
ATGTACTTCATGATTCCTGGTTCATTTGCATACCTGAAAATGTCATTACCTTCAAATATAAGAT
AGACAAAACATCATATCACTTTTTATTGGACATTTGGACTAAATAAAAAGCAGGAATGTGAAAA
AAAACACCTATAGTAAGAGAAAAGGAATCCAATATATCCAACAAATTGCTCATGTAACAGTTAC
TTGTATTAATAAAAAAGTGTTCCTTCAATCAGAGGATAAAAAACTGACAGCAGAGGTGTATTGC
TGACTAGAATCAACTACAAACATCACAAAATCAGTATTATGAAATTATACATTCTCTCCATCCT
AGAATATAATGGGATTTCAGTTGTCTTAAGACAAACCATCCTAGTTTTGATCAAACTTGTAGAA
ATCGACAATATTACTTACAATATCAAATGAACTTTATTAGATACAATATAAAATTTATTTTCAT
AAATTTGCTTCATTGATGTCGAAGATAATATTCCTCAACTCTACAAACTTGGTCAAACTTAGAA
TTATTTGACTTATTATTAAATTGCATTCACCAATCAGTTCAATTCAAAATCTTAATCCGATGGA
GATCTAACACTCTCTCTCATGTCGACTTTAACTACGTGCTAACTAGGATTCAAATTCGAGATTC
CTGGCTCTAATACCATATTTCAGGCATCAGATGTAGAATAGGAACATGCAACAATTATTTTATT
TAATTGCACTAATTAGGATTCAAACTCGATACCTTTAGCTTTGATAACATATTGAGTTGCATTC
CTCAACCAATTCAACCTAAAAACTTAAGCTGATGAAGACAGGTGGTCAATTCACTTCTATTATA
ACACTTCGGACAACTATAATCCATTATATTCCAGGATTGAAGGTGTAGGTATTTAGGCAGCACA
AAATCTCGGCAGTTTAGCCACAATTTCGATGCACGGTGGTAACGGTCAAATTGTTAAAGAATTG
AATAGTGAATATAGAAAATGTCACATTATTATGGTGAGATGGAAATAGCTACTTCATTCAGATT
TTTTTTGAACATATACCTAATTCAGAATATATGGCAGTATATCTTACTTGTTGAGGCCATCGTT
CAACAATTGCAGCTCTGGATAGGACCACTCCACAGCCAAGGGTGCACTATACTTGAGGTTCTGG
CAAGAAGAATCAGCAACCATGTTTGGTGAACCAGTGGATACAATTGTTGAAGATGTAGTGTTCA
ACATTGCCATGTCGCCATTCATTCCACTGGAGGTGTCTAGACAAACTGGTATGGCTCCTGACCC
ACTAGTAATTGAACTCGTCTGAAACGAAACAACATGTTGGTTGCAGAATGGATGTGGAAATACA
CCATAGTGGTTAGAACCTGTTGACATCTGCATGCGAAGAAATTTTGCTCTCCCACTTTGCCCTC
ATGAACACGTCATCAAGCTTACACTTATAAGTTGTCAACCCCTCTTGAAACTTTCTTCCAATAC
AAGAAAGGTTCTTTTGCAAATATTACAGTTCCATTGTCAGAGAACCCAGATAAGCTCCGCAACC
AGGGCTCCATAAACTCATTAAAGTAACCATGGATATCATCCAAACTATGATGATAATTTGCAAA
GCTTGACTGAACAAATCTTTGTTCTAACAAAAGTACTCAGTTCTGAGAGACTTCCACATTAGAC
TTC
Conservation Information
Conserved circRNAs NA
PMCS 0.062649452
Functional Information
Coding potential Y
Potential coding position 192061952-192062235(-)
Potential amino acid sequence MQMSTGSNHYGVFPHPFCNQHVVSFQTSSITSGSGAIPVCLDTSSGMNGDMAMLNTTSSTIVST
GSPNMVADSSCQNLKYSAPLAVEWSYPELQLLNDGLNKYANEPGIMKYIKIAATLPDKTVRDVA
MRCQWMAARKEATRRRKPEERYLGKKIKDRKDKMAQPSSWGTNPPVQAEMRSSSFMPRNAKHNG
FLSGDSQIDHEMLNILEENARLLNQIEVNILTSQAHNNINLFHHIRRNINGLLQSMCQIPGIMS
KMPPLPVSVDERLASYILPRAHTEV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b