Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d016552_circ_g.1 |
ID in PlantcircBase | zma_circ_002077 |
Alias | circ42 |
Organism | Zea mays |
Position | chr5: 167111844-167114623 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | KNIFE |
Parent gene | Zm00001d016552 |
Parent gene annotation |
ubiquitin-associated (UBA)/TS-N domain-containing protein |
Parent gene strand | + |
Alternative splicing | Zm00001d016552_circ_g.2 |
Support reads | NA |
Tissues | seedling leaves |
Exon boundary | No-Yes |
Splicing signals | GT-TA |
Number of exons covered | Zm00001d016552_T004:4 Zm00001d016552_T007:2 Zm00001d016552_T003:4 Zm00001d016552_T005:4 Zm00001d016552_T001:5 Zm00001d016552_T006:3 Zm00001d016552_T002:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.010101841 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chen et al., 2017b |