Detail information of Os06g0649500_circ_g.2


General Information
CircRNA Name Os06g0649500_circ_g.2
ID in PlantcircBase osa_circ_031782
Alias NA
Organism Oryza sativa
Position chr6: 26532533-26534982  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os06g0649500
Parent gene annotation WD40 repeat-like domain containing protein. (Os06t0649500-01);TF
IID subunit, WD40-associated region domain containing protein. (
Os06t0649500-02)
Parent gene strand +
Alternative splicing Os06g0649500_circ_g.1 Os06g0649500_circ_g.3 Os06g0649500_circ_g.4 Os06g0649500_circ_g.5 Os06g0649500_circ_g.6 Os06g0649500_circ_g.7
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os06t0649500-02:1
Os06t0649500-01:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATATATTTTTTATTCCTTACAGTTCGACTATGGAGTACCAAGTTGAATGCTAATCTTGTTTGC
TACAAAGGACACAACTACCCTGTTTGGGATGTACAAttgcttgaagattcagttgaagagcgca
tggagaaaacacttttagaatcagataaaactgaagcagaaagcaaggatgcagatgccgaaga
taacaata
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 717
Transcript exons: 26532533-26532634,26532889-26533040,26533841-26533951,26
534027-26534094,26534185-26534226,26534640-26534804,2653
4906-26534982
TTGCTTGAAGATTCAGTTGAAGAGCGCATGGAGAAAACACTTTTAGAATCAGATAAAACTGAAG
CAGAAAGCAAGGATGCAGATGCCGAAGATAACAATAAGAGAAAATCTTCGGAAGGTGGAAAGCA
GGGAGGTTCTGTTAAAAAGGTCAAAAAAGATAAGATTGCAGGAGCCACAGGGAAAACCAATAAA
TCTGAAACAAGCATAGTTTCGGTGGCACCTCGTGTGAAACCAGAGCTTACACTTCCAGTGATTC
CTGTTGAAGTCGAGCAGTCAATTCTTGAGGATTTGCGAAACCGTGCACAGTTGAATAGCCTGGC
ATTGCCATCTGTTAGCTTCTACACATTCCTTAATACTCATAATGGGCTAAATTGCTCATCAATT
TCACATGACGGCTCTTTGGTTGTGGGTGGATTCTCTGACTCATCAGTGAAGGTTTGGGATATGT
CAAAGATTGGCCAACCGCCGAAAACATCTAGTCCACAAGGAGAGAATGGACTTTCCCAGGGTGA
GCGCACATCAGCATCAGATTATGGAAAAAGACCTTATACATTATTCCAAGGTCATTCTGGACCA
GTTTATTCCGCTGCATTTAGCCCATTCGGAGATTTTCTCTTGTCATCATCCTCAGACTCAACAA
TTCGACTATGGAGTACCAAGTTGAATGCTAATCTTGTTTGCTACAAAGGACACAACTACCCTGT
TTGGGATGTACAA

Genomic sequence TTGCTTGAAGATTCAGTTGAAGAGCGCATGGAGAAAACACTTTTAGAATCAGATAAAACTGAAG
CAGAAAGCAAGGATGCAGATGCCGAAGATAACAATAAGGTACTCTTTATCGTATCGAAGATTTG
TTAAGTTTACTACCTATATCCTCAGCCACTGATAGAAGAGCCATCTATTTCTTTTTGTTTGGGC
CAGGCTATTAGCAGCTTGTTGTCTTATACTTCCTTAAGCAGTCCATAGAAAATATGCATTGCTT
AGCTCCACTCTGCATGTTCCTGTGCTTCCCAGTTTTGAGTCCAAATTGATGTTTCTTAGTATTT
TAGCTTCATATTTTTATCTTCTTATTTTTGCTGCAGAGAAAATCTTCGGAAGGTGGAAAGCAGG
GAGGTTCTGTTAAAAAGGTCAAAAAAGATAAGATTGCAGGAGCCACAGGGAAAACCAATAAATC
TGAAACAAGCATAGTTTCGGTGGCACCTCGTGTGAAACCAGAGCTTACACTTCCAGTGATGTAC
ACTTAAATCCCTTCATATCTCTCTTAGGAAAAATCTAGTTTGGTCGTTTGACTTTGATATCTAG
CCTGGTCTCTAACCTAAAGTTTTTAAAATTCTCCATCCTGTGGATTTTTCAGGACATAATAAGT
TATTTTAAATGGATTCGTCATTCCAACTTAGGACAATTTTAATTTTAATTTTATTTTCTTTTTT
TTTTGCCCGTTGCGTTTTCCTATCTGTGATATTCTGATTATGTTTCCCATTTTTATGCCAGTCC
ATATTAACCATGTTTTGCTTCAATTCATGCACCTACTATTCCATTTGTTTTCTTTATGAATTTC
TAATCCAGGACAAGGCCAGAACTTATTCAAAGCTGTCCTGTACATACACTATGGACCAACATAT
ATTGTTCAACACAACATGCTTCATTACACATGCTGCTCAATGTTTGTTCTGCTAGTTTTTTCTC
TCTCTAAAATTACCTGGTTAAGCCAACTCAAATAGTATGGAAGGTGGAATTGTATCCACCGGCC
AATTTTTATTCGTTAGATTGTTGATGACGATTATGTGGACCTGACTCTTTGCCAGTTTGCTTAA
CTGCAGTACATTTCAACACTTCAAAATTACTTTTTGTAAGACACTGAACAAAGGCATGTTGCCT
TTTTTGCTTTTCAAGAAATCAACAAAATTGACCATCCAATCCTCTTAGTCATGCAACTTATTTC
TAGGTGGCTCATCTATCTACATTTTTATCTGGGAAGAAGTATTTCAACCTTGGGTTGTAAGAAT
CTGAGATATATTTATCCTTTTATTTCAGTCCTGTTGAAGTCGAGCAGTCAATTCTTGAGGATTT
GCGAAACCGTGCACAGTTGAATAGCCTGGCATTGCCATCTGTTAGCTTCTACACATTCCTTAAT
ACTCATAATGGGTAAATTTCTTTGTGGCTTAATATCTGACACTGCCAATTTGCATCCTTTTCTC
TGATCATTATCTGTGGACATAGGCTAAATTGCTCATCAATTTCACATGACGGCTCTTTGGTTGT
GGGTGGATTCTCTGACTCATCAGTGAAGGCTAGTCCTTTTTGTCCCTTTTTGGTACTTTGTTCT
TATATATGTGATTTCTGTATTATTTTTGTAACAATAAAACTTTGTGTTCACCAGGTTTGGGATA
TGTCAAAGATTGGCCAACCGCCGAAAACATGTTAGTTGTTCTTCACTACTTAATGTTGTTTGAT
TCCACCTTGTGTTATGCTGAAATACTTCCATTATGTGCTGAAATGTTTTGATAATTGCCTTAAG
TTTACAGAACAACATAGTTTTATTCATTTCATTTAGTTGATGTTACAACTTACAAGTACTGAAA
TATTTTTTCCATATTAATGCTTGTGTGGATCTGTCATTCAAAAATGTCTTCTCGACCTACCGAC
ATATAATGATTTTTTGTCATACTAGTGCACTAAGTTATGACATAGCAGTATACTTGATTCCATA
ACCTGTTCAGGAATCAGGACTCTTGAATAGTCTTAGCATGTCAATTATCCTAAGTCCTAACATG
AGAGTGTTTTGTTTTATATAATGGTGGTATTTGCTGATTGAAGAAACTTTAATTTTCAGCTAGT
CCACAAGGAGAGAATGGACTTTCCCAGGGTGAGCGCACATCAGCATCAGATTATGGAAAAAGAC
CTTATACATTATTCCAAGGTCATTCTGGACCAGTTTATTCCGCTGCATTTAGCCCATTCGGAGA
TTTTCTCTTGTCATCATCCTCAGACTCAACAAGTAAAACATCCTTACATTTTGCTTATTTTCAT
ATAGTTTGTTTTCCTTTTCGTTTTTCAACTGAACATATCGTTTTCATATATATTTTTTATTCCT
TACAGTTCGACTATGGAGTACCAAGTTGAATGCTAATCTTGTTTGCTACAAAGGACACAACTAC
CCTGTTTGGGATGTACAA
Conservation Information
Conserved circRNAs osi_circ_016485
PMCS 0.226265793
Functional Information
Coding potential Y
Potential coding position 26532561-26534979(+)
26534931-26532575(+)
26532994-26534963(-)
Potential amino acid sequence MEKTLLESDKTEAESKDADAEDNNKRKSSEGGKQGGSVKKVKKDKIAGATGKTNKSETSIVSVA
PRVKPELTLPVIPVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSISHDGSLVVG
GFSDSSVKVWDMSKIGQPPKTSSPQGENGLSQGERTSASDYGKRPYTLFQGHSGPVYSAAFSPF
GDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQLLEDSVEERMEKTLLESDKTEAESKD
ADAEDNNKRKSSEGGKQGGSVKKVKKDKIAGATGKTNKSETSIVSVAPRVKPELTLPVIPVEVE
QSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFSDSSVKVWDMSKIGQ
PPKTSSPQGENGLSQGERTSASDYGKRPYTLFQGHSGPVYSAAFSPFGDFLLSSSSDSTIRLWS
TKLNANLVCYKGHNYPVWDVQLLEDSVEERMEKTLLESDKTEAESKDADAEDNNKRKSSEGGKQ
GGSVKKVKKDKIAGATGKTNKSETSIVSVAPRVKPELTLPVIPVEVEQSILEDLRNRAQLNSLA
LPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFSDSSVKVWDMSKIGQPPKTSSPQGENGLSQGE
RTSASDYGKRPYTLFQGHSGPVYSAAFSPFGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPV
WDVQLLEDSVEERMEKTLLESDKTEAESKDADAEDNNKRKSSEGGKQGGSVKKVKKDKIAGATG
KTNKSETSIVSVAPRVKPELTLPVIPVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLN
CSSISHDGSLVVGGFSDSSVKVWDMSKIGQPPKTSSPQGENGLSQGERTSASDYGKRPYTLFQG
HSGPVYSAAFSPFGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQ(+)
MLILFATKDTTTLFGMYNCLKIQLKSAWRKHF*(+)
MLVSDLLVFPVAPAILSFLTFLTEPPCFPPSEDFLLLLSSASASLLSASVLSDSKSVFSMRSST
ESSSNCTSQTG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017