Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os06g0649500_circ_g.2 |
ID in PlantcircBase | osa_circ_031782 |
Alias | NA |
Organism | Oryza sativa |
Position | chr6: 26532533-26534982 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os06g0649500 |
Parent gene annotation |
WD40 repeat-like domain containing protein. (Os06t0649500-01);TF IID subunit, WD40-associated region domain containing protein. ( Os06t0649500-02) |
Parent gene strand | + |
Alternative splicing | Os06g0649500_circ_g.1 Os06g0649500_circ_g.3 Os06g0649500_circ_g.4 Os06g0649500_circ_g.5 Os06g0649500_circ_g.6 Os06g0649500_circ_g.7 |
Support reads | 1 |
Tissues | shoot |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os06t0649500-02:1 Os06t0649500-01:7 |
Conservation Information | |
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Conserved circRNAs | osi_circ_016485 |
PMCS | 0.226265793 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
26532561-26534979(+) 26534931-26532575(+) 26532994-26534963(-) |
Potential amino acid sequence |
MEKTLLESDKTEAESKDADAEDNNKRKSSEGGKQGGSVKKVKKDKIAGATGKTNKSETSIVSVA PRVKPELTLPVIPVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSISHDGSLVVG GFSDSSVKVWDMSKIGQPPKTSSPQGENGLSQGERTSASDYGKRPYTLFQGHSGPVYSAAFSPF GDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQLLEDSVEERMEKTLLESDKTEAESKD ADAEDNNKRKSSEGGKQGGSVKKVKKDKIAGATGKTNKSETSIVSVAPRVKPELTLPVIPVEVE QSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFSDSSVKVWDMSKIGQ PPKTSSPQGENGLSQGERTSASDYGKRPYTLFQGHSGPVYSAAFSPFGDFLLSSSSDSTIRLWS TKLNANLVCYKGHNYPVWDVQLLEDSVEERMEKTLLESDKTEAESKDADAEDNNKRKSSEGGKQ GGSVKKVKKDKIAGATGKTNKSETSIVSVAPRVKPELTLPVIPVEVEQSILEDLRNRAQLNSLA LPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFSDSSVKVWDMSKIGQPPKTSSPQGENGLSQGE RTSASDYGKRPYTLFQGHSGPVYSAAFSPFGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPV WDVQLLEDSVEERMEKTLLESDKTEAESKDADAEDNNKRKSSEGGKQGGSVKKVKKDKIAGATG KTNKSETSIVSVAPRVKPELTLPVIPVEVEQSILEDLRNRAQLNSLALPSVSFYTFLNTHNGLN CSSISHDGSLVVGGFSDSSVKVWDMSKIGQPPKTSSPQGENGLSQGERTSASDYGKRPYTLFQG HSGPVYSAAFSPFGDFLLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQ(+) MLILFATKDTTTLFGMYNCLKIQLKSAWRKHF*(+) MLVSDLLVFPVAPAILSFLTFLTEPPCFPPSEDFLLLLSSASASLLSASVLSDSKSVFSMRSST ESSSNCTSQTG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |