Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d018309_circ_g.2 |
ID in PlantcircBase | zma_circ_008830 |
Alias | Zm05circ00137 |
Organism | Zea mays |
Position | chr5: 218240903-218241204 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d018309 |
Parent gene annotation |
MSS1 homolog |
Parent gene strand | - |
Alternative splicing | Zm00001d018309_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d018309_T012:2 Zm00001d018309_T007:1 Zm00001d018309_T014:2 Zm00001d018309_T004:2 Zm00001d018309_T002:2 Zm00001d018309_T008:2 Zm00001d018309_T006:2 Zm00001d018309_T011:2 Zm00001d018309_T013:2 Zm00001d018309_T001:2 Zm00001d018309_T016:2 Zm00001d018309_T009:2 Zm00001d018309_T005:2 Zm00001d018309_T015:2 Zm00001d018309_T003:2 Zm00001d018309_T010:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.271546312 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
218241141-218241201(-) |
Potential amino acid sequence |
MMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |