Detail information of Os03g0257500_circ_igg.1


General Information
CircRNA Name Os03g0257500_circ_igg.1
ID in PlantcircBase osa_circ_018951
Alias Os_ciR2184
Organism Oryza sativa
Position chr3: 8323510-8328132  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 6
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTTGTCCAGCTTCGCAGCATGCTCGATGAGTCGCTTGCAATACATCTCTATCATTTCGAACGC
CTCCAACATGTTGTCCTCCGCTATGACCTGCTCTGCccggtggatggcgcgatcgaggtggccg
agggtgagaagctggcgaacgtcatcggtggcaatggacttgcgagctaggcgaggccggcgca
cagcagcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCGGTGGATGGCGCGATCGAGGTGGCCGAGGGTGAGAAGCTGGCGAACGTCATCGGTGGCAATG
GACTTGCGAGCTAGGCGAGGCCGGCGCACAGCAGCGATGCGTGAGATGGCGAGCCCTAGGAGGG
TCTTGAGCTTGCCCGTCTGCTTGGAGGTCTTCCGATGGAGGAACCCCATTGTTAAGTCGGTTCT
CGTCGGTGTTCTTGTACTAGGTTAGTAGGTTGTTGGCTTCGACGTTTGGCTACGAACTCCAACC
TTGGCAACTGTGTATGGGCAGTTCCTTTGCGTGATGGAAAGGAAGGAGGAGGAGTATGCGAGTT
GCTTGTGTGAGCTGATGAGGAAGTCTGCGTTGAGGGGCAAAGATTTTGTAGGGCCATTCTGCTT
CTATTTTGGGGAGTCTAATTTTTGTGCTCGTTGCTTCACTTCGGTGTACATGAACTGCTGAACT
CCTTTCTTGCATATGGAAAATGGGGGGTGGGCATCACGTGCGGCATTCCTAGATAATGACAATG
AGCAAAGCATGCACAATGCTATGAGAAAACTGCAAGCCAAACGTGCAAAAAATTTCACCAGAGA
TAAACACGAAGAACATGCATTACCCAGGGAAAACACGATGCCTGATATTGGAGGATGCAGAACT
TGTGCTGGATGAGAACGATTTTTGAGATGGCATAGCGAAGACGAACGCAGTCATGCTGTCATGC
ATGCTCACAACCTCGGCTGCTAAACGGCGGGCTTAGTATCCAGCTCTTGGCAAATAAGCAAGCC
ATTGTAGTCTTCGGGAGCTCAGACAAGTGCATTCTTCTTAGCGATTAACCAGGGTTGTTAAGTA
TTTTATGCCCATCATGGAGGCCCTCATGTAAGGAGGCCGACACAACTGCGGAGTCCAGGCGACG
CCCTACACTTCCTCGTCGCTCTCATCGAACACGACACCCATCTCCCCTTGTGTAACCAAGCCGT
GTAGAGCTTGAGCAACTTGCTACTTTCCTTGCAAGGAGGCTAGAATAGATCGTGTATGTACTAT
ATACTAAGTGCAACTTTTGGAAATAAAAACCCCTTGACATTACTCTAGCATGGTGAATTGTCTA
GGAGCTGAAGAAAGATCCCCTGAGATAGTAGTATTTTGTTGAGAAAAACTCCGAATTAATTACC
TTGTTGAATTATTGCGACGGTTCAATTTACACCTCTAAACTATAAAACCAAAAATTCTACCCAC
TCAACTCTTCAAATCGGACCAATAACCCCCTATCCCAATACAAATTGGATTTGATCTTATGTGG
CATCAGACGCGGCGATTAATTTTTTTTTTAATCTACATGACAGTTGGCCCACTTGACATCGATT
TTTTTTTATTTTTTTGAACATTTTTATTTTTTAATTTTAAAATAAACCCTTCAAAATATTATTT
TCAAAATCTGAATCTTTTGGCCATGCCAGCCCGCTTAGAGTGGCAAAACAACACTGACATGCCA
CACGCAACAAGCGTGACAGTTTTGTACCGTCGTGACCAAATAACACTGCCACGCCATCTAGACC
GGCATGACAATGTTGTTTTACCACGCCAGTCTGGCTGGCTTGGCTGAAAGGTTCATATCTTATA
AATAAGTTTTGAAAGGGTTTATTTTTAAAATTAAAAAGTTCAAAAAAAATTCCTTGATAGCTCT
ATCTTCTCTATTTTTTTCTTCACAGCCCAAGAGAGAAAATGGGAGGGCAGGGAGGTAGTGGGTC
ATGGGTGTCCACGGCGAAGTCCCGCGAGTGACGACGCTAGCGAGCAGCGGCGCGGTAGCAGGAG
TCTAACACCGAGGCTCGAGGAGGGGCGCCTAGCGGACAGAGCTAGAGAAGGGGGCGCCGTCGTG
CTCACTGGCCAGGAAGGCAGGTACACAACTAGATCTGACCACGGGTCGTCAGTGCCTTCTGGTT
GCAGATGTGCAGGTACATCGTTCCCGTCATTGTGCTGCCGCACGTGTAGCTGCATCCAGCATTG
CCATCTAGTGAGCTAGCTAAGCTCAAATACTCAATCGTGAAGGAGGAAGAAGCTTATTAATTAG
TTGGCTCACCGGAGAGGCAGAGACGATGTTGGCCGTAGCTGCAAGTGACATGGTTGCACCCGCT
GCTTATATACTTGTTGCCAAGGCCTTCTACTCCTGCCTTGTTGGCTTTGTTGCCTTGCTCTTGC
TGCTTCTGTTTCAGGACACCAGGCGGTGTCCTCCTTGCCGTTTTCAGATACGAAGAAGAGGAAT
TGGCTCCGCGGAAACCAAAAGATTGGTTGACATGCTAGTACATTGCTACTGCTTCTTGCTCTTT
GTTGACATGCTAGTACATTGCAAAAGATAGTGAATTGGGCGATTTTGCCGCAGCGGCGCTTGGA
CTCAACGCATGGAAGCGGCGCTGGTGAGGTTTAGATCGAAAAGTTGTCGTCGAGTTACTTCCCT
TCCTTCATCGCTACATCTGAGGTCGAGAGAGAGATAGAGGGAGAGATATGACATGTGGGCCCAC
TGTTGCTTTCTTTATTTTTTCAGTTGGAATGCCACGTGTGTACTAGTTTGTGCAGAAAACAACT
CAAAATAGTTTTTAGTATTTGTCCGGTTTGAAGAATTCGGTACACAAAATGTCTGGTTTGTAGT
TCGCGGGTGTAAATCGGACCGATGCAATAATTTAGGGGTGTAATTCAGACTTTTTCATATTCTG
TCAAAATGCATGACACCAAGTACTACAGAATCATGCTTGTTTAGTACCATAGATATGAGTGTAG
AATAGTGGGTGGCCCCTTCTTTATGCAGAGAAACCATGTTATTCTCGTAGCACCATATTTCCAC
ATCTTTGCTTAACCTTCTTATGTGGTTTTTATCCCTATGCTTCTGTGCCTTTGTAGAAAGCCAG
CTGCGATACTGCACTACCTCTTTTTCATACTTTAATTCGTTTTATTTTTTTTAAGTCAAAATTC
TCTAATTTTGACTAAGTTTATAAAAAAATAGCAATATATTCAACACAAAACAAAAAAACTACCA
GAATATGTTCAATGTTGGATATAATGAAACTAATTTGGTGCTATAAGTGTTGTTATATTTTTCT
ATAAACTTGGTCAAACTTTTAAAGCGTTTGATTTAAAAAATCAAAAGCTACTTATAATATTAAA
TGGAAGGAGTAATTCATAAAGAAATCCACATTATTTTGACGACCAAACGTCGGAACCTCTGGCT
AAACTGTAGAGCACATTCATCCTCCACTAATTGGAGCTAAGGAACACCATATGTAATTGTTACA
AGTATCGTTTAAATGTTCATCATACATATATTATAGCAGACATCATTTAAATCTTCAGTATATA
CTCTGCACAAACTAAAAGTTTGCACAATTTGAAGGGTAAAAAAGAGGCACTGTAACTGCAACGA
TAAATACGTGTGTACTTTGTCTGATCTGTATTTGCAATTTACACAGGGAGATGGATTCTAATCT
CTCGGGTGGACGTCCACCCGTTTCTTGCATGTCACCTAAATGATTATGAAAAAATTTCAAAAAA
AAAATTGTAACATAGGTTAATATGTAATATATCATTTCACAAACATGCAAGTTCAAATTTGACT
CCTACAAGCTATAACAAAAATAACAAATTAAACTTTAACTAGTATATGTATATTTACAGTCAAA
TTTGTTGTTTTTGTTACAACTTGTGGAAATCGAATTTGAACTTGCATGTTTGTGAGATGATATA
TTACATATTAACCTATCATGTTATTTTTTTTAAAAAAAATATCATAACCATTCAGATGACATGT
AAAAAACGGGTGGACATCCACATGTATATTCACAGCTTGGTAATCTTGGAGTGCACACACAGCA
CCTAGTTTTTTTTTACATTTTTGAGCTGGTATCAAAGGAAGTATAGCTTCCTGTGAGCACCGGT
GCTTCCCCACCTGACTTGTGATATACACTAATAAGATCCATCAGAGTTAGAAACAGGGTTGTCG
TCTTGAGTACTCTGAGCTCCCATAGTTGTTCTAGCATGATGTGTTGTGCTCAAGCTCCCGATGG
TATCAGTCTTCTTCATCCTTGATCGCATCTTGGAGCTCAGAGAAGTCCACTATGATGTTGTTCT
CCATGGCTATCTCTTTCGTCACCTTCCTCTTTAGCTCCATGCTTTTCGCATCACTGGACAACTT
CCACACCAACTGCAAGACCCAACTTTGTTAACTCTCCATTCCTCCATCTTTCCAAATACAAATC
ATTGACTCGTGAAATGAATGGATAGTATATGCTATCTAGTACCATGGGATCGACGATTCCGGTG
CCGTCCTTGGCCGCCTCGGTGAAGTCGCTGCCAAACTTATCCGCAAGGATGGTGCGCGCGAACA
GCAACTCCGGCAATTCGCTGCACCAACCGGCGGCGAACATGACCGACGCGGCAGCCTCTCGTAT
CTCATCGGTGCACTCCCTGGACACACCAAATAGAATTGTCATGTGACCGGAAAAGAGACAAGGA
CGCGATCAAGTCAAGTGTGAAGAAATGAAATGTATGTACCCAGGCTTGTCCAGCTTCGCAGCAT
GCTCGATGAGTCGCTTGCAATACATCTCTATCATTTCGAACGCCTCCAACATGTTGTCCTCCGC
TATGACCTGCTCTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.417783059
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2095-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015