Detail information of PGSC0003DMG400033089_circ_ig.1


General Information
CircRNA Name PGSC0003DMG400033089_circ_ig.1
ID in PlantcircBase stu_circ_000831
Alias chr06:51402713|51407441
Organism Solanum tuberosum
Position chr6: 51402714-51407441  JBrowse»
Reference genome 3.0.38
Type   ig-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing PGSC0003DMG400033089_circ_ig.2
Support reads NA
Tissues stem
Exon boundary   No-No
Splicing signals   CT-CC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTCATCTTCATTTGATACATAATCCTCACTTCCGTCCTTGCTGCTATCACTTTCTTCTTTCAC
CGGCAGGGAATTCAGTACGGCTGGGAAATCTACACCcttgacatgacgaccgggaagtccacat
tatccttttgatctttgaccaccatagcttgaaaaaactgcctatatccattacccatcttggc
taaaaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGACATGACGACCGGGAAGTCCACATTATCCTTTTGATCTTTGACCACCATAGCTTGAAAAA
ACTGCCTATATCCATTACCCATCTTGGCTAAAAAGATAAGAAAGTACATGTGGTCACGACAGCC
ATATCCCTTCACCTTCCGAACTCTCTCAAACACATAGTCCGTGCCCTACAACGAGTACAAGCAA
ACTTTCTTAGCTTTCTGAACAATACAAACAAAGGAAAAGGGAAGGAAATGAAAAGTGTGATTAG
AGCACAAAATAATAGTGGATAAGAAAGACAGCATGAGTTACTAGATCATACCTTATCATCATTA
TATTTCTTAAGTGCTCCTTCAGCATAACCCCTCAACATCCTTCTTTTTTTACGATCACGTAAGT
AGTGGCGTAGGGGATAGGAGGGCAGCAGGCGTCGCCCAGGATATTTTTTGTATTGTTTTTTAAC
ATCAATACGCTATCAAATACAATGAGACAACCATCACTAATTAAATTGCATCAAACTTGTTCTT
ATAGCTAGTTATTTCAGGGGAGTGCCTTAGAATGTTTTTTATTTGCGGTACAAACTGATACTTT
CTTGTTGATTGTGCATTGACATAAACCAGGTGATTAGTAGTAGTGAACTTGAACTATTAACTAA
AAGGTAAGTAACTAAGATACAACTAGTTAACTTGTATAAAAATTGTCATGTAGCAGCTAAAGCA
CAACAAAACCAAAGGTAAAGGCAACTAGGTGATGCATCTAAGTATTTCAGGGAAAAAAGAATAG
AGTAAGCTACCTCGCTCTCATCAACCTGTTGGAAGTAGGTCACCCAAAAAGGTACATTGCATTC
CACTTCTGAATCATAGTCAGATCCTCTGGATATAACCTGCTCACCCTCAGAACTTTCACCTTCG
TCGTCGGTGCTATTGTCATCTTCATTAGATACACATTCCTCAATTTTGTCCTCGATGCTTTCGA
TTTCTTTGTTCACCAGCGGGGCATCCAGTAAGTCTGGGAAGTCTACCCTCTGAAAATCCGGCAC
ACCCAGGTATGCGTATATACAGATTAATGATAGCTAGGTGATGCATCTACGTATTTCAGAAAAG
GAAATAGAGTCATCTACCTCGCTAATAGAATTATCGGATTCTAGTTCTGAATCATAACCCACAC
CTTCGTCGTCGGTGCAATTGTCATACTCATTATTAGATACATAATACTCACTTTCGTCGTCGCT
GCTAACCGGCGAGCAATCCGATTCGACTGGGAAATCTAGCCCCTGATAATCCGGTACGGCCCGT
CGCATTGGGTGCAACAATGGGGGCAGTGGCGGTGCCGGTGGGTGCAAATGTACACGTTCCATGA
CTTCTCTCTCAGCCGCTGATGTGCAAAAAGGAGAGTTACAACTTACAACATACACTCTCCGTCC
AATTTTACTTCTTATTTATTTTGAAATAAATTTTCAATTTTATTTGACACTTTTCACTTATAAA
TGATATGGAGAATGTTATTTATTCTAGGGAAAAGGCTCAAATATGCCATCGAACTTTCAGAAAA
GGCTCATTTATGCCATCCGTTAAAAATTTGGCTCATCTATGCCATTACCGTTTAAGAAAAGGCT
CATTCATGCCATTATTTTTTAACGGTGGTTTTACAAAACCATTTTTTACACGTGGCCAATTATA
ATTCGGCCACGTCATTATTTTTTTTCAGAATTTTGATTTTTTATTATAAAAAAAATAATGACGT
GGCCGAATTATAATTGGCCACGTGTAAAAAATGGTTTTGTAAAACCACCATTAAAAAATAATGG
CATGAATGAGCCTTTTCTTAAACGGTAATGGCATAGATGAGCCAAACTTTTAACGGATGACATA
AATGAGCCTTTTCTGAAAGTTCGATGGCATATTTGAGCTTTTTCTCTTTATTCTAAAATAAATT
TTCATTTTTATTTGTCACTTTTGACATATAAATGATATGGAGAATAATTTCATACCAAATTTCA
ATTTAGTAATGCTTGTCGTGTTTTACTACACTATCCCTACTAATTAATGTTTAATATTAGCTCT
TGAAATGATATGACAATAATTTCATACCAGATTTCAAGTCACATACACCTAGATACATGTTTTG
GCGAGATTTGTCCATAGGAGAGTGGCGAGCGAGATGAGAGAGAGGCGAGTGAAATTTGTTAATG
TATTCGGATACGTGCAAATTCATTCAAATGTAATGTATCTAGAGCAAATTACACCTATTTTTGA
CTCCATATATCTCGAGATACTTGTATGTGATATTTGGACGCGTTAAAATCTGATAAGATGTGCT
TCTCTCTTTTGCATCATTCCTAATGGACATGCAAATTCATTTAGATATAATGTATCTAGAGAAA
ATTACACATTTTTGATTTCATATATCCCAAAATACATGTGAATTTATTTGGACGAGCTAAAATT
TGATAAAATATGTAATATTATTGACTAGCATTTATCTAACTAATTAGCTCCTATATTGGTAGGA
TTTCTATAAGTTGTACTCTTATTACAAAGAAAAAGGTGTCAGTACTTGAGTAAATTAAACACAT
CCATTTGAATAGAGTATTGATGCAAAAGAGAGAAACACATTGTTTCCTTAAATTTAAGGTCAAA
TCTCATTGTTTCCATATTTTTCACATCAGATACACTCCATTACTATTTTAACATGCCCAACAAA
AATATGAACAAGGAAGTCAAATAACATAGTGAAATTTACATCCAACAGCATCTGCGACAATATC
TCTTCACCTGTACAATAACAAAAGTAATAAGAGTTGGTGAGTAAACTGCAAAAGCTGAAAATTA
GCCATTCTATGAGCAATTAAGCTAAAGCTATAACAGGAGAGCCACAACACTCGTAGCAGCACAT
TAACAGAATACATGATCATCACGTTTCTTTCTTAGTACCAATCTTTTTCCCTTAAAATAACATA
GCAGTTTCTCAGAACAAAATTAAACCAGGGGAAGAATGACACGTATCTTTAATTCAACCAAGAA
AAACTGCATAATCAAAGACACAAAGCAACACCGAGAATTCATTGTTATAGGTGAGAAAATTGCA
CATTGTAAAATATGAGTTCCACGCACTGTTGATTAGTGTCGGGAATAACTCTATGAAAACATTC
ATCTGTTTCACTAAAATCAACAAACTACATCGTATGGATTATTTGAAAACAGAAAACAGAGCAA
TTTATATACAAACAACAAAAAGCAACTGGTGGATCTCTACCTAGTAAAAAAAGGAATAAGTTTG
CATATATTTGAAAAATTCAGCACCAAAACTTCATTATCTAAAGCATTTCAAACAACATAGAGTA
GAAAGCTAACATCAATAAATCAATCAAAATTGGACTTTGATGTGGTTTTACTTTAACTGGAATA
CTTTTCAACCTCTATAATGAGATTTTTTATACACACATTATTATCTTGAACGGTGTCACAAGTC
AAATGCTGCCACATAAAGTTTGATAGAGAATGTAGTAGACTTTCTAGAAAAACTTATTCCTTCC
ATTGTTGCTAATTGGTTCCTACGTCATGTAAATATGTTTATAACTGGCCTTAATCTTATAGAGG
TGGATTAGACTTAAAAACTCTTGGTGTTCTATAATGCATACACAGTTATGATACTTGAAGACAA
CCTTAGAAATTTAAGCATGTTAAATCATCACAGAAGCAACATCTTAAAATGTCTAGTAGCTAAA
TATATACCCTTTTCCTGACGACCAGGAAGTCCAAATTATCCTCTTCATCTGGGATCACCATAGC
TTGAAAATAGTATCTTTCTTCATCATCCGTCTTGGCTAAAAAGATAAGATAGTAAATGTAGTCA
CGAGAGCCACCTCTCTTCACATTCAGAATTCCCTCAATTACATGGTTGGTGCCCTAGAATGAGT
ACAAGTGAACTTTCTTAGCTTTCTGAACAAAACAAAAAAAGGAAGAGCGAAGGGAATGAAAAGT
GTGATTAGAGCAAACTTTTTTCTATGGATAGGAAAGATAGCAAGAGTGACTAGAGCATACCGTA
TCATCATGGTATTTCTTAAGTGCACTTTCAGCATAACCCTTCAACATCTTATACTTTTTACGGA
TACGTAAGTAGCTTGGAAGGGGATAGAAGTTAGGCAGCGGGGGCGGCCCAGGATAATCTTTAAT
ATCAAAACCCTATCAAAATACAATGAGACAAACATCACTAAATTGCATAAAACTTGTTATTTCA
GGCAAGTGGCTTAGAATGTTCTTCATTTGTCATACAAACTAATGGTTACTTGTTGACTATACAA
TGCCATCAACCATGTGATTAGAAGTAGTGGACTCGAACTATTAACTAAAAGGCAAGTAACTAAA
ATGCACCTAGTTGACTTGTATACAAATAGACATGTAAAAGCAGCTAAAGCACAACAAGCCAAAG
GTAAAGGCATATGTACATACAGATTCATGAGAATTAGGTGATGCATCTAAGTATTTCCGGAAAA
ATAATAGATTCAGCTACCTTGCTCTCGTAGACCTGTCTGAAGTAGCTCTCCCACATAGGTTTAT
CGTGTTCTAGTTCTAAATCATAGTCCGTATTCTGGACTATCCTCTGATTACTAACATCATCCTT
ATCTTCGTTGTTGGTGCTATTGTCATCTTCATTTGATACATAATCCTCACTTCCGTCCTTGCTG
CTATCACTTTCTTCTTTCACCGGCAGGGAATTCAGTACGGCTGGGAAATCTACACC
Conservation Information
Conserved circRNAs NA
PMCS 0.683702198
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2018