Detail information of AT2G05510_circ_g.11


General Information
CircRNA Name AT2G05510_circ_g.11
ID in PlantcircBase ath_circ_012880
Alias 2:2016460-2016658
Organism Arabidpsis thaliana
Position chr2: 2016460-2016658  JBrowse»
Reference genome TAIR10.38
Type   ue-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G05510
Parent gene annotation At2g05510
Parent gene strand +
Alternative splicing 2_circ_ag.3 AT2G05380_circ_g.4 AT2G05440_circ_g.1 2_circ_ag.2 2_circ_ag.3 AT2G05440_circ_g.4 AT2G05440_circ_g.5 AT2G05440_circ_g.6 AT2G05440_circ_g.7 AT2G05440_circ_g.8 AT2G05440_circ_g.9 AT2G05440_circ_g.10 AT2G05440_circ_g.11 AT2G05440_circ_g.12 AT2G05440_circ_g.13 AT2G05440_circ_g.14 AT2G05440_circ_g.15 AT2G05440_circ_g.16 AT2G05440_circ_g.17 AT2G05440_circ_g.18 AT2G05440_circ_g.19 AT2G05510_circ_g.1 AT2G05510_circ_g.2 AT2G05510_circ_g.3 AT2G05510_circ_g.4 AT2G05510_circ_g.5 AT2G05510_circ_g.6 AT2G05510_circ_g.7 AT2G05510_circ_g.8 AT2G05510_circ_g.9 AT2G05510_circ_g.10 AT2G05520_circ_g.1 AT2G05520_circ_g.2 AT2G05520_circ_g.3 AT2G05520_circ_g.4 AT2G05520_circ_g.5
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05510.5:1
AT2G05510.3:1
AT2G05510.6:1
AT2G05510.1:1
AT2G05510.2:1
AT2G05510.4:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCCACCATGCATAATTGCATCTCTATATACACTTATGTCTTATAAGTATGCATCAAAATAAACC
ATGGTGAGTTTGTAATGCAGTTCCTTCAGAAATGTgtggaggacaccatggaggaggaggccac
gggcttaacgaacctgttcagacgaaaccgggtgtttaaaagttaaaactataaaataaattca
ccaccag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGGAGGACACCATGGAGGAGGAGGCCACGGGCTTAACGAACCTGTTCAGACGAAACCGGGTGT
TTAAAAGTTAAAACTATAAAATAAATTCACCACCAGTCCACCATGCATAATTGCATCTCTATAT
ACACTTATGTCTTATAAGTATGCATCAAAATAAACCATGGTGAGTTTGTAATGCAGTTCCTTCA
GAAATGT
Conservation Information
Conserved circRNAs NA
PMCS 0.17964732
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020