Detail information of AT2G04940_circ_g.1


General Information
CircRNA Name AT2G04940_circ_g.1
ID in PlantcircBase ath_circ_012824
Alias 2:1736831-1737437
Organism Arabidpsis thaliana
Position chr2: 1736831-1737437  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G04940
Parent gene annotation Phospholipid scramblase
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G04940.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCACGATCTATTTGGGCTAAGACTTCCCCATCAGCATCCTTCACTGTAAATGTCCAATTCCAA
AACCCAGGATTTTCTACCACTGCAAACTGGTTGTTCcagccaccatgtcttgaaaagtaatcat
tatctagtgaaatcgcaagcgtaaggacaacagctctttctgacaaagtcaatggccgtttcac
ttctaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCCACCATGTCTTGAAAAGTAATCATTATCTAGTGAAATCGCAAGCGTAAGGACAACAGCTC
TTTCTGACAAAGTCAATGGCCGTTTCACTTCTAACTCTTCTACCTGTCATGAGTTGCATAAGAA
AAGCTCGATCAAATGTCTAATGTTAAAGTAAACAACCAAAATTACAAGTACAAGAGTCCACGGC
ACAGGAGTAAACCCACCAGTGTCGCAGGGCCGGTCTTGGCTGCAGCATCAGCTTTTCCAAATCG
GATCACGTACTGCCCAGCATCTGTGAATATCTGTATCACATATATAAGGAGACATTCAGATTTT
TATATTTACGATGTGTCTTCTAGTCTAACATAGATTGCACTGAAAATATTTCAAAATCTTCAAG
GCTTATTGGTTGCCACAATCAACTATGTATTCATTTTTCCTGTAAGAGATTCTTCATTTGGCTG
ATCTTTAAGTATATAACATTTAGTTAGAGAAAACAAACCTCAAAGCCAAAACCTCTCCAATCAC
GATCTATTTGGGCTAAGACTTCCCCATCAGCATCCTTCACTGTAAATGTCCAATTCCAAAACCC
AGGATTTTCTACCACTGCAAACTGGTTGTTC
Conservation Information
Conserved circRNAs NA
PMCS 0.179631562
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020