Detail information of 1_circ_igg.6


General Information
CircRNA Name 1_circ_igg.6
ID in PlantcircBase ath_circ_006704
Alias 1:18719775-18722118
Organism Arabidpsis thaliana
Position chr1: 18719775-18722118  JBrowse»
Reference genome TAIR10.38
Type   igg-circRNA
Identification method find_circ; CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing 1_circ_igg.4 1_circ_igg.5
Support reads 1/2/2
Tissues root;leaf
Exon boundary   NA-NA
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGGTCTACCACCGAGCCCACCATCTATACCGGTCATAGGTCATCTTCACCTTCTCCTCTCTGT
TCCATGTCACAAATCCTTTCAGAAACTCTCCTCCAActccttatggagattactggagattcat
gaagaagctcttagtcacaaaccttttcgggtctcattccctcgagcagacacggctcattcgt
gagaaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCCTTATGGAGATTACTGGAGATTCATGAAGAAGCTCTTAGTCACAAACCTTTTCGGGTCTCA
TTCCCTCGAGCAGACACGGCTCATTCGTGAGAAAGAACTCAAGACTTTCCGTACTATGTTGTTC
GATAAGGCGGCAAAGAAGGGGACAGTTGATGTTGGTAAAGAGATGATGAAGCTAACGAATAACA
GCATTTGCAGGATGATAATGGGGAGGAGGTGTTCAGAGGAGAACAGTGAAGCAGAGAAAGTCGA
AGACTTGGTGATCAAATCATTTAGTTTGGTGAAGAAGGTCCTTATAGCTAACACGGTTGGTCGA
CTTCTCAAGAAGTTTGGGATCTCTCTGTTTGAGAAGGAAATCATGGAGGTCTCGCAGAGGTACG
ATGAATTGCTGGAAAAAATTATTAAAGAACACGAAGAGGATCCGAACAAGAAAGAGGATAGAGA
CATGATGGATGTTCTGTTGGAAGTTTGTGCAGACGACAAGGCTGAGGTTAAGATTACCAGGAAC
CAAATCAAAGCGCTTATTGTGGTAATGTCTTGAGTTTCTTTCTTGGTTTTCTTCAATGACTGTC
GCATAAGGATCATGCAATGTCTTTATATCGTGCATGTGGTTGTAGGAGCTTTTCCTTGGAGGCA
CTGATACTTCAGCACAAACAATACAGTGGATAATGGCCGAACTCATTAACCATCCCGAGATTCT
TAAAATATTAAGAGAAGAGATAGAATCTGTTGTCGGAACAACGAGGTTTATTCAAGAAACAGAT
CTCTCAAACCTGCCGTATTTGCAGGCTGTGATGAAAGAAGGACAAAGACTACACCCACATTCGC
CAATGTTGGTGAGGAATGCAACCAAAGGATGCAAGATTGGAGGGTACTACATACCGCAGAACAC
AACGATGCTAATAAACACCTATGCGATGATGATAGATCCAGATTCATGGGAAAATCCAGACAAG
TTTCAGCCCGAGAGGTTCATGGTGTCTCCTTCAAAAGGGAAAGACGATGAGAGAGAACAGCTAG
CTTTGAACTTCATTCCTTTCGGGAGCGGAAGAAGAGCATGTCCAGGAGAAAAATTGGGCTATCT
CTTCACTGGAGTAGCCATTGGAACAATGGTACAGTGTTTTGACTGGATAATCGATGGAGATAAG
GTTAACGTGGAAGAGGCTGGAGAAATGACGCTGACCATGGCTCATCCACTTAAATGCACTCCTG
TGACTCGAGTTAACCCATTAGCTAGCTTTGAATCTGAAGATCCTAAGTGGTTGATGGAGGAGTT
TGATATGTATTGTTGAAGTTGCAGACATATGTCTGAAACTAATAATGGAACATGCTGTCTTTGT
TTTTTCATATGGAGTTTGATCACTAATATTGTTGTTTCATAACAGAACTTGTTGTCTTTATGTA
TTTCTGCTGTTTCACAACAGAACTTGTCTTTATGTATTTCTGCTGTTTCACAACAGAACTTGTT
GTCTTTGTTGCCCATGTCTACGCTAATTTCGTTAGCACAATGCACACTAACATGGAACACATAC
CGTAGTATAGACCTCACCGTGGGGGTTAATCTAGAATCAAGCAGCTGAGAAACAATACCATTGT
ATGAGGTAGTAGTAAACTGACCCTGTAACAAACCTTGTGCCATATTTCCAAAAGGTTTGATCTG
AGACAAATAAGAACACTCGAAAAATAAATGGTCTCTAGCACTCTGCAAAAAACACACGAAGTGT
CGACATTCCCATTCCATAAGCTCATCCTATCCCCCGTTGTAAGACGATTGTGCATTTCCAACCA
CACTCAGAAGGAAACTTCCGTCCTTACCTCTCCAAAGCGCAATGTCTGGCTCTGTACTTTCAAT
AACTGCAGACTGGATGCTGTTTACTTCCACAAAGCCGGTTTCAGAGCTTGCAAACTCATCAGAA
TCAAAACAAGTAGTGGAAAAGTATTTAAACACCATTTGATTGTCTTTGGATCCAAAAACATTTT
ATATATCATGTGGTTCCTTGAAGATTAAACTATTGAATTACTAATTTATATAATCTCAAGGAAA
GATCTGATCTCAAGGATATGTATATAGTAAAACTGTTCTGCTTCATCTAACTCTCTTTTCAATT
CTTGGACAGCAATGGCAGCAATCACCATTTACTTTCAGCTCTGCTTCATCTTCATCCTCCTAGG
TATCTTCTCACTCTTCTGTCTCTCTGCTTTTTTCTTCAAGAAACCAAAAGAGCCACTACTCCAA
GACTGTGGTCTACCACCGAGCCCACCATCTATACCGGTCATAGGTCATCTTCACCTTCTCCTCT
CTGTTCCATGTCACAAATCCTTTCAGAAACTCTCCTCCAA
Conservation Information
Conserved circRNAs NA
PMCS 0.241113442
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020