Detail information of Zm00001d044339_circ_g.1


General Information
CircRNA Name Zm00001d044339_circ_g.1
ID in PlantcircBase zma_circ_004390
Alias cold_test_circ_007741
Organism Zea mays
Position chr3: 225460369-225460513  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d044339
Parent gene annotation aldehyde dehydrogenase3
Parent gene strand +
Alternative splicing Zm00001d044339_circ_ag.1
Support reads NA
Tissues seedling
Exon boundary   No-No
Splicing signals   CT-TA
Number of exons covered Zm00001d044339_T002:1
Zm00001d044339_T005:1
Zm00001d044339_T003:1
Zm00001d044339_T001:1
Zm00001d044339_T006:1
Zm00001d044339_T004:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACAGTTCAACATCACAAACAAGAAGAAACATGTCTTGTAAGATACTCCTCCAAAGGATCGGTT
GCCTGTACcctgcagaccaagaccgtcgtcactccgctgtacaacactccatggctctgaccga
cctcatcctgtccgatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGCAGACCAAGACCGTCGTCACTCCGCTGTACAACACTCCATGGCTCTGACCGACCTCATCC
TGTCCGATGAACAGTTCAACATCACAAACAAGAAGAAACATGTCTTGTAAGATACTCCTCCAAA
GGATCGGTTGCCTGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.886207816
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Tang et al., 2018