Detail information of LOC18054408_circ_ag.1


General Information
CircRNA Name LOC18054408_circ_ag.1
ID in PlantcircBase ptr_circ_000031
Alias circRNA031
Organism Poncirus trifoliata
Position chrNW_006263303.1: 19612594-19617292  JBrowse»
Reference genome Citrus_clementina_v1.0
Type   ag-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues shoots
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAACCTGAATGCATCGTAATACTTCTGATAAAGAATAAGAGCCACCTAGTGATTTATTGATTAG
TTCTACCGGTCTCTCTTCTATCCACAGCCGCCAGGCatgtccaagaaggttgtgatcatgatca
gcatggttaaatcctctgtttttctttccacaaattatctctaataccaaaacaccaaagctaa
agacatcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGTCCAAGAAGGTTGTGATCATGATCAGCATGGTTAAATCCTCTGTTTTTCTTTCCACAAATT
ATCTCTAATACCAAAACACCAAAGCTAAAGACATCGGATTTTACTGAAAATAGTCCATCTATTG
CATACTCAGGAGACATGTAGCCACTGAAAAAGTTGGTGCAAAACAATTGGTGAGTTCACTGATT
ATATAAAGAAAATAAAAACAAGCTCACTTACTATGTTCCAACAACTCTTTTAGTGTTAGCCTCA
GTTTGATCTACCCCAAATGATCTAGCCAGGCCAAAGTCTGAAATCTTCGGGTTCATCGTATTAT
CTAATAAAACATTACTGGCTTTAAGATCTCTGTGTATTATCCTCAGCCTAGAGTCTTGATGAAG
ATAAAGAAGCCCTCTAGCAATTCCAGCAATAATGTGGCTTCGTTTGCTCCAATCCAATAATTTG
CTTCTGGTTGTATCTGAAAATTCATCATCCTAGGTGAGATCAGCCCTTTGCTTAAGTTCTGAAA
AAGAGAATATGAAAATAATTACTGTAAGACAAGAATGACTCGAATTTATGGAATATCAAACCAA
AAATGAAGTAGTCCAGGCTTTTGTTGGGCAGGTATTCATAAATTAACATCCGTTCATCTCTTTG
AGTGCAACAACCAAGAAGCTTCACAAGATTTCGGTGCTGAAGTTTAGCAATCAAAAGGACTTCA
TTTTTGAACTCCTCCATTCCTTGTCCAGAGCCTTTTGAAAGCCTTTTAACTGCAATTTCTTGCC
CCTCTATCAACATTCCCTACGAATCATTGGTCACAGAAGTAAGCTTCGTTTTACATGAAAATGG
TATAGACTAATCACATAATATAATGTTACCTTGTAAACTGGTCCAAAACCACCCTCTCCTAACT
TGTTTTTCTCTGAGAAATTATCCGTGGCATTAGCTATGATCTTCAAATCAAATATTGGTAGTTC
CATTTCTTCTTTTTCGTTGCCTTTGACAATGTAATTCAATTTATGGCTGTCATCAGTCTTCCAT
GAAATTGTAGGAATCTTCAAAACTAATGAAGAACGCTCATTGCTATGCATAAATGTTTAATTTG
GTGCAAAAGTTTCCTCTATCTGATACTTAATGAAATCAAAATGGTGTTTCATGATCATGATTCA
TGAGCTTATTTACCTTTTTCTTTCTTTTTTTTTCCTTTTCGATGAATCCTCACCTAAGTAAGGT
GATTTTATTGAAATAAAATAAAAATGTAGCAGCAAAACATAGAAAAGAGGTAATCACACCTCAA
ACTAGCCACACAAAAGTTACAAGATGTAGCTGAACTGATGCCACATTATTACAGTAATTTACCT
TGATTACTGTGTTTTTTCCGCCTGTACATGAGCCCTCCTATGAAAATAACTGCTGTAGCCAATG
ATATGGATGTTATTATGATCATCACTTGCTTTTTATTCTTGGATTGTCTTCTTCTCTCAACATT
ATCTGAAAAGTTGTAATAGAGTTTCAAAAATATATATATTCTTGAGTAGAAACACAATAGATTC
AACAGAATTAGCAAGTTTGGAGCAAATAATGTCATTAACAATATACATCAGAAATTCTAAATTT
ACGCAGCATCTGCAAAGAAATTACCCTAGATTTAATAGATTGCTGTTAGTAAAAAGAGCAGAAG
GAAAAGAAGGGGATACCTAGTTCTGATGCAGCCATCCGTATAAAAAGGTCTTGACCACTCTCAG
GAAGTTCTTTGATGTCAATCAGGTCATGGAACCAAAGCAAGCACCCACTTCCTCGTCCTCTGAC
ATCCGCATTGGCATATGCTGTGCAAGAACAATTCTTAGAACACAACTCCTTGCATTCCCAAAGA
GTGATGTTCTTATCAACCCAAGAGAAACGTGTATCAGGCAATTTCACTGCTTTGTGCTCCAGAA
AGCCATCTCCATGTTTGCAATCCAATGGAGTCCTGCGAACACACCCACCAGACTTATATTGCAT
ATCCCATTCTCGTTGAGAATTGGGTACAAACCCTTGCAAGCATTCACATTCAGGAGAGTTAGAA
TTGATGTTACAACTAGCATATGCCCCACATAGTGCATAACTGTCACACTGATCAAGCGTCACTC
CAGAAAACCGAGAGAACAATGTCCAAGTCTTCGTTCTTTCCATCCACGTGTAACGCTGCACAGT
ACCTGCCGGGTTTATCACCATCCTGGAAGGCACTGAACTATTACTGAGATTATACGTATAAAAT
GCCTCTTTCTCATTTGACACATATTCAAATGTATATACTGGATTTGGTTGGAGCTGAGGAACCC
CCGTCCAATGAAGACCGTTCCACAAGCCTGCTCTAAATGTTATTATAGAATTCTTTCTAAGAAC
TAGTTGCGGAATACCACGAGGATCTAACCCATATGTGAAATCACCACGAGCAGGGTCGTCTGTG
CTCTTCCAGGACGATAAAAACCTGTTCAGACCAGTACCCAAGTTTATTCCTAATTTCATACCTG
GTAACAAGGTATCACATGGATAATCAAAGCTCTGCCACAAGATATTATCTGGGTTATTATCTTT
TCCATCTTTCACAACAAGATTTCCTGATTCCATAAGCGCTGCAACAGGTTTCTGTGCACTAATT
GAAGAATTGGATGACCAAACAGTGTCATTTGTGCTATTCAGAAGGACAAGAATTCCATTCCTTT
CGCCATTAATTCTTAGAACTCCTGAGCGATCAGAAAGTGGAGCATCTCTATTGGCAACCCAGGT
AACAGTCCCCTCTGCTATCTTCTTGTACCATATTCCCAGGTACCGAATGTTTGAATTCCCTGGA
CTGAAAAACCCTAATTCAAAGCTTGCTTTAGCAGAAACTAATGTCTCACCATCTTTGATGGACT
GGCCAAGACTGATGGTATCTAGTGTTCTGGCAGCACTGATAATATAAAACAGAAAGCTGTAGAT
AATTAACAAATTGAAGCCTTCCATCTTGCTCATGCTTATACTAATAGCTTGTTTCATACAATTT
GTTGCCAATGTTAGAATGAAAGGCATTAGTACAGATACCATACACCTTGATGGACAGTTGGCTG
AAATTCTTAATAGGTAAGCACTTTTCACACCCAAAATGTTGAAAAGTCATGAGCAATATGCCTC
CCAAATGAATTGGACGTAACCTGTCAATTGTTGTCAATTAACCTTGTTTCTGAGGGCAGAGGCA
AAATATCGTGCTTTATGGACGTCTGATTCAAGATAGCCAGCTACCCTTTCATTTTCCTTCAATT
TACTCAAGTAGCTTTCAAGGGGCCCAGATAATTTACTCAACAGCTTCAAGACTTTTGGATCTAA
CACATCCTTTTTATACTGGCAAGAACGATTTAGGGAAAATGGGGTGTTCATGTGGAGTACGATT
CTGTCAGCCATGAGGTCCGTGACTACTATTACAGAAATCTTGGCACATAAGGCAAATCTACAGA
CCTTTTCTTTTCTTTTTTTTTGGGGAAATTAATCTACAGACCCTAATTTTTTGTTATACTAACC
CCATGATTTATGGAATAACAACACCCACCCAATATATGAAATAAAATAACATAGAAACCAAGAG
TTGTTGGTGACCAAACATTCAGCAAACCCGAGAATCTAAGCAAGCCACAACGATTCCAAAAATG
AATTTCGTTGCTGATAATAAAAACTAATCATAATAAGTCAGTGAGCTGGCTTCCCAAATAACCT
CTTGATTCTTCACAAAGTACACAACTTTGCTGCACGTAGGAACCTCACTCAGTTGACCACCATT
TTCTGTTAAAATCAAAGGCAATACTGGAGGTGGAATGTTTAAAAATTCCATTACTTTTTATCTT
TCTTTCAGGGGTTATGAAGTTAAAATATGTCACAATGCCTAAGCGGGGCCATTAGCCCCACACT
GGAAATGAAATGAGCTTTCAAAAATTTCAGTTATCTACCTTATCAAATGGGACTGCATTTTTTC
AAAATCAAAACTTATAAAAATAATTGCAAAAAATTAAGAACTTTGCTCAAACAAACAAATAGAA
TTAAAGAATTGCATTGCAGAGTGTGAAAAAAAGGGGTGATAAAGAAAACAACATCCATGATAGA
TATGATGATTAATTCTGGAGATCACAAACATTTTCACGAAATAAGATTCTAAAAATAAGACATT
TATTGCAGTTAGTCAAGATACTGACAATACTATTTGAATACCTTTAACCTTCCTGCAGGAGGCC
AATCAATAGTCATTGACCTAGTCTGGTGCATAATTTAAAGGGATACTGATTACCGACAACACCT
TTAAACACCTGCAATTTGTAAACCATTACTTGTAGACCAGCTCCAGCATTATCTACTGCTTGCG
ATTTACAGGAAAACCTTTGATCGATGTAAACTGGTGTTTTCTTATCGACCCTCTATTAATGAGA
TGGTGATCTCATTGGTTGAGAGTAAGCTTCGCTTACTTGATGAGGACCCTGATTCGGGTGGGTT
CCTCTCTGTGAAAAATCCAGGCTGCTTCGGTTGAGGCAGTGACCTTTCACCACTCAACATTAGA
ACCACAGATGACATGTTTGGCCGGTCTTCAGGCCGTTGTTGAACACATAACAGACCAACCTGAA
TGCATCGTAATACTTCTGATAAAGAATAAGAGCCACCTAGTGATTTATTGATTAGTTCTACCGG
TCTCTCTTCTATCCACAGCCGCCAGGC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description playing an important role in the early flowering process
Other Information
References Zeng et al., 2018