Detail information of Os04g0441900_circ_g.1


General Information
CircRNA Name Os04g0441900_circ_g.1
ID in PlantcircBase osa_circ_023931
Alias Os04circ05861
Organism Oryza sativa
Position chr4: 21990638-21992247  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os04g0441900
Parent gene annotation Cleft lip and palate transmembrane 1 family protein. (Os04t04419
00-01);Similar to transmembrane CLPTM1 family protein. (Os04t044
1900-02);Similar to predicted protein. (Os04t0441900-03)
Parent gene strand -
Alternative splicing NA
Support reads 3
Tissues panicle
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os04t0441900-01:4
Os04t0441900-03:4
Os04t0441900-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAGTCTCATTGAGTGCTATCAATTTATCTCTCAGTAGCCAAAACTCATTGAAGAATACAGTTG
GGTAGTAGTTGTTTGAAGATGGATCAACATTCAAATttcattgcaattgcgtcatactcctttg
tcttattctgtgcatatgattcacggtcccggaacctcaacatgggaatctttccacttctatc
gatctgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTCATTGCAATTGCGTCATACTCCTTTGTCTTATTCTGTGCATATGATTCACGGTCCCGGAACC
TCAACATGGGAATCTTTCCACTTCTATCGATCTGAACAGGAGTGAAGAGTTGTGACAAATTGAT
CAAAGAAAACATCAGAACTGATGCAAAGATTTCTACATCATTGAGCTCAAAAGATGGATGCAAT
CACGCTATATAGACAAACACAATTATGTATGACGAAAAAATATCTTGCCATAGACTATACCTAG
TACCAAATATTAATGGTTTGACGTAACAAGAAAAGCCATAAAAATAAAGGGCTGATTTTGAGTT
GACTAAAATCACCAATACATTGGACTTCATGAACAGAATTGGCAAATGCACAAAACAAAGTTAA
ATCCAATACTCAAAATGGAGTAATCAGTGAAAAATCCACAATAATCATGAGATCTTTGTTATCT
CAATATACTAATGCTTTATCCATTAAAAATACCAGTGCTTTATTCAGTGCTATAAATACAACTT
TTCAGGTGAAGATCACTAGATCTATCAGTTCCATTTATACATTTTATTACTTTCACTTTTATGC
ATAAGATGGGTTCCATTCATACAATTATATCTGACTGAAAAATATTAAGAATAACAGAACTAGG
TGACAAAATGACCATAAAGGATAGAGAACCATATCTTAAATGGCCTACCTCAACATGCATTGCT
TTTCCAATCTTCCAAAATTCAATGCAAACACCAATTCCAGAGCTACCAAGGATCATCCATGAAG
TCTCATTGTCGAGCAGGTAGAGGAAAATAATCAGCTGGCATACAAAGTTCAGAACCACGGATTT
TGCTGATAGACCTTCCATGGACTTGTTCTTATTCCAGAACTGAATATCTAAGCAATGGCACAAG
AATATCATCAAATGTAAATGGAGTTACTTTTGGATAAAATACTTATGGTTACCATATACATGGT
AATATGTAACTATGCAATGTACGTACCATTTTTGAAAGCCAGAAAATCAAACAGAGAGTGGAAC
AGAGAAACAATCATGGTCAATCCCAAAAAGTATGGATTTCCTTCAAGGAAAACTCTCTGCAAAT
AACAAAAAGGAGTCGAGGGTCAGCTCAATGAGTAATCAAAACCATCCAAGGAAGATGGAAACTT
GTAACAATATCATTCAATCAACATACTAATAATATCACAAAAGTAACCATCTATAAGGCTCTAA
AGAATATGAAATAGAGGTGCATATGTAGTATACTAGTGGAATCTCAGCAAGATAAAGCAGGTAC
TGTAAGGGTGGTCACAGAGCATAGAAGGTATATATAAACAAAATGTGTGTATGTGGATAGATAC
AAATTTATAATTGAGGATATCTGCATGTACCTTGAGCTCATCAGCCTCCCCTTCAAGCATACTT
CCATAACTGCGATGAACTTGGAAGGACTGCTCCATCTGAAGAAATATTTGCCACTTGGTCATGC
TAATAGGACCAACTTCAAGGTTCAAAGGCAGTTCCTCCACAGTCTCATTGAGTGCTATCAATTT
ATCTCTCAGTAGCCAAAACTCATTGAAGAATACAGTTGGGTAGTAGTTGTTTGAAGATGGATCA
ACATTCAAAT
Conservation Information
Conserved circRNAs osi_circ_005482* osi_circ_014396
PMCS 0.244008799
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015