Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | LOC18045673_circ_g.1 |
| ID in PlantcircBase | ptr_circ_000232 |
| Alias | circRNA233 |
| Organism | Poncirus trifoliata |
| Position | chrNW_006262274.1: 7940046-7943413 JBrowse» |
| Reference genome | Citrus_clementina_v1.0 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | LOC18045673 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | shoots |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | XM_006436530.2:10 XM_024185586.1:6 XR_002905947.1:10 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
7942936-7940048(-) 7941773-7940520(+) 7943059-7940257(+) |
| Potential amino acid sequence |
MQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFES LEEGFLAKILVLEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQE TSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLE EGISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPT MSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVLEGSKDVPVGQPIAIT VEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMN QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGISSGKNSFVDVNGILLRPLSSTLAP EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIE TDKATVEFESLEEGFLAKILVLEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTH QDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETD KATLEFECLEEGISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHT VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVLEGSKD VPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVL EMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEE(-) MLPWLIVGDKAGIPTTVCEGSSEDEKCRTPICILSFKGLSCTSGAKVDDKGLNKMPFTSTKEFF PLEIPSSRHSNSRVALSVSISHITSPTSILSPSFFLHLAMLPWFIVGDSAGISRTTRGGSSDVL ILEALVSCTASFLTS*(+) MTKALTKCHLHPQKSFSHWKYPLQDTQIQGSLCPSLSHISHLPLLSCLLHSFST*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | playing an important role in the early flowering process |
| Other Information | |
|---|---|
| References | Zeng et al., 2018 |