Detail information of LOC18045673_circ_g.1


General Information
CircRNA Name LOC18045673_circ_g.1
ID in PlantcircBase ptr_circ_000232
Alias circRNA233
Organism Poncirus trifoliata
Position chrNW_006262274.1: 7940046-7943413  JBrowse»
Reference genome Citrus_clementina_v1.0
Type   e-circRNA
Identification method CIRI
Parent gene LOC18045673
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues shoots
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered XM_006436530.2:10
XM_024185586.1:6
XR_002905947.1:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGAGCAGTATAAATCAACATAAGAAATGAAAAGTAAACAGATTCAAACCTTAACAAAATGCCA
TTTACATCCACAAAAGAGTTTTTCCCACTGGAAATAccctcttcaagacactcaaattcaaggg
tcgctttgtccgtctctatctcacatatcacatctcccacttctatctgtcaaattaagacatt
agaaaaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCTCTTCAAGACACTCAAATTCAAGGGTCGCTTTGTCCGTCTCTATCTCACATATCACATCTC
CCACTTCTATCTGTCAAATTAAGACATTAGAAAACAAAGCTTTTCACATGCTGGGTGATTTATA
CTTTCACTTGATTAGATTAGAAAGCATTTTATAAATTCAATAACTCAACAAAACTAACCTTGTC
TCCTTCATTCTTTCTCCACTTAGCAATGTTACCCTGGTTCTGCAGAAGACATTTAAAACAATTC
TAAGTTCTGAGATAAGGAAAGAAAGAAAGATTGGAAGGAGAGAAAAAAGGTAAAAGAGAAAATC
AGCATGGGAAGCCAAACAATTTAAAACATCTGAACACAAGATTTGTTACCATAGTTGGGGATAG
TGCTGGCATTTCTAGAACAACACGAGGGGGAAGTTCTGATGTGTTGATCCTAGAAGCACTTGTT
TCCTGTACCGCTTCCTTTTTAACATCCTGATGAGTTGAACTTTGTTCTTTAGCCTCTGCTCCAC
CAGCAATAGTAGCAGGGATATGCTGGATATCATCTGCATCCTCAACCTTGTAAACACATAAAAG
TAAGTGTGAACAGTCCCCTTCCCAAATGTTACTCTTAATGGAGATAATCGAAAATCGAAAACCC
CATTTCCATGTATCAACATTATTGACAACAACACAAGTATAAAGTAATGGTTGAAAAATATCAA
ATATCCCTAGAGAACTGCACCAGGAAAAGGAAGGACAAGAAGGGAAGAAAAAAGGAGAATATAT
GTACACTTACTGAGGCATACATAAGGAGGGTTATGCGAACGCATTTCAATATAGGATTTTATTT
TCAAGATCAAACTAGCACATATAACTGTGCACAATATTGAACAGAGAAATAATGAAGCAACTTA
TGTTCAAGGATTTTCAGTTTACCGTTATTGCAATAGGTTGTCCCACAGGCACATCCTTTGAACC
TTCAAGTACTAGTATCTTAGCCAAAAACCTGTAAAAAGGTTTTTTTAAAAAAAAACTATAATAA
AATAAAGAAATAAAAAAATCATCTAATAAAGCTTTGCCAAAAATATCCAAGGATGGAACCCCAC
AATCAGGTATCTACTTTGTGTGTGCCTTAAAAAATCCCACAATGAAGCTTTAACAAAAAAATTT
TAGGATCATTTCTCGTGATCAGACATCTAACTTGTTTGTGCCTTTCCTCTGGTCAAAAATAATG
ACACAGAAAAAAATTGTAAGGAGCAAAAGAAATCAAGGTAGGATATTCAAAGAAGATAAACTGT
TGAATAGGAAAATAAAAGACAGCAGATAGGAGAAAGGATTCCAAAATAAGATTATGAGAGCATT
CTCATTAGAATTCCAGACTAAAACATGAGATAAAGAGTGGACCAAAAGAGGTGCCATTCCAAAC
TGTCATAAATCACAAGTATGAAATAATAGCAATCACACGAGGAGAAGAAAAGGATATGGTCTAA
AGATTACCCCTCTTCAAGACTTTCAAACTCAACTGTAGCTTTGTCCGTCTCTATTTCACATAAT
ATATCACCGATTTCTATCTGTCAGATAGGATCAACAAAAGTCAACAAATTGATTCGACTCTGTA
TGAAAAAGGGCTTATCTTTCACTTATCATCTTTAAACCATATCAAGCATGGACAGAACTGACTT
CATAACTTCCATTTTAGCACCTTATAACTCACCTTATCTCCTTCTTTCTTCCTCCATTTAGCAA
TGTTACCTTGGCTCTGCACAAAAGCATCAAGCTCACAATGTGATTCAGGCAGAAAAGACGAATA
TCCCACCTAAAGACAAGATAAGGCAAATGGTCCACCTACAATCTTCCACTAATTCTTACCATTG
TCGGGGATAAAGCTGGCATTCCCACAACGGTGTGTGAAGGAAGTTCTGCAAATATAGACTAGTG
AGATAGTAGAACCATTTAAAACGCATACCTAGGCATTTTAAACAAATGACTCTCCATTAAGAAT
GATAAATCAAATTTTAGATAACAAGCCAAGAATATAACATAATTTCTATTGAAATTGTTGATGT
AAGTACATGGCTATTTTGAGATTTTAGGAAGCTAGCTCTGAGAAATTAAATTTTCTGTGCAACC
CCAAAAGCCTGAGGCAACATCCAACTCAACCATATAATTTATTTCAGACTGGGTCTTAGTTATT
GTCATTAGTTTTATGCGCAATGAGCAGAGGACAATGGGTAAGTTAATCACCTAACATCTAATAT
TAACCTACGACTAAACCAATTTAACTAATGCTTGAACTGGAAAGGCAGGGGATACACATAGCTC
CCTTTGAATTCACTCTAAACACCAATGACCTTCGTTATCTAATATTTCCACAGAGATATATTTC
CATCAATCATAATATGTCACAAGTCCTCGTGAAGCAATATTAAATTCTAGTTTCAAGTAAAATT
TATTGCTACCATTTTAACATAGATGCTAAAATATATAGCAAAATGAAAAATCCTGAAAAGCATC
TTGCAGAATTTCCATGGTCATGCAGGATGTTGCCCTGCTACCTTTATCAATAGGGACAACAGGC
TAAGCAGCACAATTCGAAGCAGCCTTAGTAATAGCTGAACTTGATGAAAATTCGAATGCATCAA
ATGTAAGTTCTCATCCTAGAATTCCTTCTCTTGAACAATGTGTCAAGACATGACACTGTCCTAA
CAACAGAGTAGGCTTCCTAAGACCTCAATACATTACGCAAGACCTTACGAGCTTTGCTATACTC
TAGTGTAACCAAACCATCTACCCAGACTAAAAATAGACATGAAACTAAGTCAGATATATATGTT
ATAAATGGAAAAAAACTACACGAACAAAATTGATAAAAACCTGAAGATGAGAAATGCCGCACTC
CAATTTGCATCTGTAAAATGACAAACATAAGAAGAAAGCCTCAATTCCAACTAGCAAAAGTTCT
ATTAATTATAAATTCAAACACTAACCTTGAGCTTTAAAGGACTATCATGTACTTCAGGGGCCAA
AGTTGATGACAAAGGCCTGATGAATGACTATAGTCATCAGTAAATTGCAACACAAAGAAAACAG
CAAAGAAGCAGGAAGAAAAATTAAATAGGAACTGCAAGCTGTTTTGGTCCAAATGAAGCATAAC
AGACCAACCTAAGTCAAATATATGGATGTATATCATTCATTCAATGACAACATCTGGCTCACAT
TATGAACAAAAATAATATTAGAAGATCTATTTCACCCAACTCAAGCTTCAACTAAAGTTACAAG
GTTGATGAGCAGTATAAATCAACATAAGAAATGAAAAGTAAACAGATTCAAACCTTAACAAAAT
GCCATTTACATCCACAAAAGAGTTTTTCCCACTGGAAATA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 7942936-7940048(-)
7941773-7940520(+)
7943059-7940257(+)
Potential amino acid sequence MQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFES
LEEGFLAKILVLEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQE
TSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLE
EGISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPT
MSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVLEGSKDVPVGQPIAIT
VEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMN
QGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEEGISSGKNSFVDVNGILLRPLSSTLAP
EVHDSPLKLKMQIGVRHFSSSELPSHTVVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIE
TDKATVEFESLEEGFLAKILVLEGSKDVPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTH
QDVKKEAVQETSASRINTSELPPRVVLEMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETD
KATLEFECLEEGISSGKNSFVDVNGILLRPLSSTLAPEVHDSPLKLKMQIGVRHFSSSELPSHT
VVGMPALSPTMSQGNIAKWRKKEGDKIEIGDILCEIETDKATVEFESLEEGFLAKILVLEGSKD
VPVGQPIAITVEDADDIQHIPATIAGGAEAKEQSSTHQDVKKEAVQETSASRINTSELPPRVVL
EMPALSPTMNQGNIAKWRKNEGDKIEVGDVICEIETDKATLEFECLEE(-)
MLPWLIVGDKAGIPTTVCEGSSEDEKCRTPICILSFKGLSCTSGAKVDDKGLNKMPFTSTKEFF
PLEIPSSRHSNSRVALSVSISHITSPTSILSPSFFLHLAMLPWFIVGDSAGISRTTRGGSSDVL
ILEALVSCTASFLTS*(+)
MTKALTKCHLHPQKSFSHWKYPLQDTQIQGSLCPSLSHISHLPLLSCLLHSFST*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description playing an important role in the early flowering process
Other Information
References Zeng et al., 2018