Detail information of Os03g0223000_circ_g.7


General Information
CircRNA Name Os03g0223000_circ_g.7
ID in PlantcircBase osa_circ_018582
Alias Os_ciR9118
Organism Oryza sativa
Position chr3: 6437961-6438137  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0223000
Parent gene annotation Similar to atypical receptor-like kinase MARK. (Os03t0223000-01)
;Similar to Atypical receptor-like kinase MARK. (Os03t0223000-02
);Similar to atypical receptor-like kinase MARK. (Os03t0223000-0
3)
Parent gene strand +
Alternative splicing Os03g0223000_circ_g.6
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0223000-03:1
Os03t0223000-02:1
Os03t0223000-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGGCCGCGAGGATCGACGAGATCCGCCGCTCCAGCCTCGGCGACCGTCCGGCCACCGACAGC
GCCGGCGAGGGCGAGGAGCCTTCAcagaacgtcgaggaggagatggtgcagctcctccagctcg
ccatcgactgctcggcgcagcaccccgacaggcggccgtccatgtccga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGAACGTCGAGGAGGAGATGGTGCAGCTCCTCCAGCTCGCCATCGACTGCTCGGCGCAGCACC
CCGACAGGCGGCCGTCCATGTCCGAGGTGGCCGCGAGGATCGACGAGATCCGCCGCTCCAGCCT
CGGCGACCGTCCGGCCACCGACAGCGCCGGCGAGGGCGAGGAGCCTTCA
Conservation Information
Conserved circRNAs NA
PMCS 0.25482839
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015