Detail information of AT2G04880_circ_g.1


General Information
CircRNA Name AT2G04880_circ_g.1
ID in PlantcircBase ath_circ_012821
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1718069-1718429  JBrowse»
Reference genome TAIR10.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene AT2G04880
Parent gene annotation WRKY transcription factor 1
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTAAGATTGTAATTGATATAGAAATTTCCCAAAAGTGGAGACTTTTAGTGGTTATTCTGCAAC
ATTTTATTCCTAATTGTTGTTTCTGTGGAATTTAGTgtaaattctttattttattttgtttttg
aagttgtattaaattctttaatttagtattaaatgttgaatctttatgcgaatcttgttactgg
gtcgtctc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 361
Transcript exons: 1718069-1718429
GTAAATTCTTTATTTTATTTTGTTTTTGAAGTTGTATTAAATTCTTTAATTTAGTATTAAATGT
TGAATCTTTATGCGAATCTTGTTACTGGGTCGTCTCTTAACTCCGTAGTAAATGGAACAAATTT
GCCGACTTTTTATGTAATTTGGTTATAAGATTTTAGCAAATGCTTTAATTTTGGGGTTTTGTTT
GTTTCAAAGTAAAGTACTTGAGTCTAAAGATCGTTGGTGAAGCATAGGACTAATCAATTTTGAG
TCTTTACTAAGATTGTAATTGATATAGAAATTTCCCAAAAGTGGAGACTTTTAGTGGTTATTCT
GCAACATTTTATTCCTAATTGTTGTTTCTGTGGAATTTAGT

Genomic sequence GTAAATTCTTTATTTTATTTTGTTTTTGAAGTTGTATTAAATTCTTTAATTTAGTATTAAATGT
TGAATCTTTATGCGAATCTTGTTACTGGGTCGTCTCTTAACTCCGTAGTAAATGGAACAAATTT
GCCGACTTTTTATGTAATTTGGTTATAAGATTTTAGCAAATGCTTTAATTTTGGGGTTTTGTTT
GTTTCAAAGTAAAGTACTTGAGTCTAAAGATCGTTGGTGAAGCATAGGACTAATCAATTTTGAG
TCTTTACTAAGATTGTAATTGATATAGAAATTTCCCAAAAGTGGAGACTTTTAGTGGTTATTCT
GCAACATTTTATTCCTAATTGTTGTTTCTGTGGAATTTAGT
Conservation Information
Conserved circRNAs NA
PMCS 0.209708513
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017