Detail information of BGIOSGA033253_circ_g.2


General Information
CircRNA Name BGIOSGA033253_circ_g.2
ID in PlantcircBase osi_circ_008595
Alias Chr10:21860764_21862418(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 18499216-18500870  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033253
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033253_circ_igg.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033253-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AACGACAAACCTGAGAGATTGAAGGACCCTGAACCAACGAGTACTCCTGCTGTCAAAAAGGCAC
AGAACACAAACATCAGCATGGCCACAACGACCGAAGgcaatgatttgtttgagaacgcgtgcat
ggaatttgatgaagataatctaaagcccacatttcggattctctggggaataccaggttgctat
ctgttctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCAATGATTTGTTTGAGAACGCGTGCATGGAATTTGATGAAGATAATCTAAAGCCCACATTTCG
GATTCTCTGGGGAATACCAGGTTGCTATCTGTTCTCCCTCTTTAGGAATGTTGATGTTTGCTTG
AGCAGTTAATATATGCTAGAAGGTTCTTATACTTGTCTTTATGTGGATTTTGTCTTATAAAATC
CATTCTTTCAAAGAAGGTCGCAACCCCTTTCACTTGGTTTATCTGTCTGATTTCATTTTTTATT
CTATACATTGTTCAGCATGACTAAACACTGTCCATCCTGTTTGTCTTCCATGCTCCTATGGTAT
GGAATGTTGTAAATCTTTCTGCGCTAAGGATTAATGCTATGCTGAAGATGTCATGTTATTTTTC
CAATCAGTACCTACATCTTTTGATTTCTAGTGAACTGCACAACAGGCAATATATTATGGTTGTA
ATGTTTGCTATAAACCATCTGCTCTGAGACGAGTCAAACTAGTTGAATGGCTTTATATAGTTAT
GGTAAACAAGTGCCTGAACTGTTGTCTGTGCTATAAAGCTTGCTCATGTTTCATTCTTGAAATT
CTTATGCTCTCATATTTTGTTACAGATGTAATTTGTAGTGTATTACACATGTAGGACGTTCAAA
TGCAATCAATATTGCTGAAAGACTTGGTTTGCCCTCGGACATAATAGAAAGCTCACGACAGTTA
CTTGGAACAGCTGGTGCAGAGATAAACGCGGTAAGTTTGGCAGGACCACCCGTATGGGTTGATA
TTGTCCTTACTACCATAAGTTCATCTAAGTTTTCTTTGCAGTTGGTTCTGTTTTCCATTAATGG
GAAATGGAACAAGGTTTTTCTCTCGTTCTAATTTTTTTTCTTTGCAGTTGATAATGGACATGGA
AAATTTCAAACAACAATATCAACATCATCTTCAAGAGGCACAATATTATGTTATGTGAGAAATT
CTCTACCTAGACTTGTGTACTTTACATTGAGAATGCTGCAATTCTCTTTCCCAGCCAACACATT
CTTGTTTGGATATAATGTGACATATACAACCTTTTGAGTTTTCGATAGAAAAAGGTAAATAACT
GATTTTAAGTTATGTTGTTCAATCATGGTTTGCATCTATATGTTGATCTGCCTTTCCGAGTGAA
CTTTTAGTTCCACCACATAGGATCTTAGATTCTTTCTGATGTATTAGATTGTATGTGTGTTCAT
GTGACTATTAGATTCTCTCTGATGTATTAGATTGTACATGTGTTCATGTGACTATCATGTGTAA
CTGAATTAGCATCTGTCCTGCTTATTAGGTCGAACTTTTCATATTAATTATGCATGTGTTCATT
GACGTGTATCAGGCAGTCCAAGGAGCTTCACAATAACTTGGAAGTGGCACAGAAGAACATTATA
GACCACACTTCTGCTCAAAGAAAAAGAAAGGCGAGAGTAATTTCAGAGTATGCTGTTATGGCTC
GTTCCATTATACGTAAGAAGTTTCAGCAGTTCCGCGAATCTGCAATAGCCAAAAGAGTGCTTGA
AGAAGAGAAAGCTGTGCAGAACGACAAACCTGAGAGATTGAAGGACCCTGAACCAACGAGTACT
CCTGCTGTCAAAAAGGCACAGAACACAAACATCAGCATGGCCACAACGACCGAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021