Detail information of BGIOSGA001910_circ_g.1


General Information
CircRNA Name BGIOSGA001910_circ_g.1
ID in PlantcircBase osi_circ_008906
Alias Chr01:9609409_9610894(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 10378252-10379737  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRI2
Parent gene BGIOSGA001910
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered BGIOSGA001910-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGAGAATACACATACAACACGGACAAGGTACAGTAAGGCTTTACCGAGTGAAGATATATTGC
CCGCCCATCTGACGATCCATTTTTTCTCCGAAACCCccttatattgccatgtggcgttgtttga
ttatcacctacattaccagggccatgttggtttgcagaaacagcattcaaaaataagctaccag
actggttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTATATTGCCATGTGGCGTTGTTTGATTATCACCTACATTACCAGGGCCATGTTGGTTTGCA
GAAACAGCATTCAAAAATAAGCTACCAGACTGGTTGGACTGGAAAGGCCAAAATGTATTCTTCA
GAGTTTTCAAAATCTGAAAAGGATAAGTCAAAGTAAGCGAAAAATGTTTTCTCATCAGAAAAAA
TTAACGGTCGAAGTCTCATAGCACCACCTTCAACAGAACACAGACCAAAAACATTAACTAATAT
AAAGAGCAGGAGCGACATGTCTGACAAAAAGAAGGAAACTATTAATGCTACATTCTAAAGTGCA
GATGAAACCTTCAACAGTATATATCTACCTATACAACTCCAAATCCAAGATATTTTGGTTTAGT
TCCAGATAAAATTACAAGTTGACTTGCAGAGATGTTGAATTATGCTTGGATCACGTGGCACTTC
CAAAATCGTTATGCTCCGGTACTTAGGACTACTTGATGACCAAGAAGGTGTACACTGAACTGTA
AGGTCTCAAGCATGGCAGGGAGAAACAAATTCCCGGAGGACAAGAAGTAATTGACAAGTGTACC
GTGTACAAAGCATGCACAAACCCATGGAAGTACTTATGGCAACCACCTGAAAAGCTATAAACTA
CAAAACTCCCTTCTTTATTTCTGAAAGGACTTATACAGACAACCAAAGAACAATTATAAAAGGT
TTTAGGCCTGTTCATAAGTGTTGTACTTGTATGTATAAACAAATGACCATAAATTCATGTCTGT
ACTTATGGAAATTGGTAGGAAATTCGTTCAAAAATAATTGACAGGAAATTGCATATGGAAATTT
TCAAGCAGGAATCCAATTCAAGTCTTGTTCAGTAATCTGATGCATAAATGCAAACAATCTTTTT
GCTGGTAAAGGTACTTGAGGAAATGGTTCCCCTGAAGCAAGCTAGAACAACATGAAAATTCCCT
GCTGTAGGAAAGTTGTTGAGATTGCCACTATGGCTGGCGTGCTCCTATGAATTGGTAATTGGTG
GTAAATGCTACCAGATATACAAATAGCATGTAGCAGACAAAAAACATATTTACAGTTAAAAATG
GAACATGGGTACTGAGGATAGAAAAAATACACACCTCAACCAAAAGTGACTTTGATGTCATAAT
ATGCGGTTCATCGCCCAACTTGCTTTTGTGTTTGTCATAACCCCTAGGCAGACTGTTGAGATCA
TGTGGAAAGAAAATCTCCACATTGAATTCCAGTAAGCCATACAATCGTAGCATCTTCAGTATCT
CGGAGTATATCAACGAGAGCATTAGAGCTGATCCCAACCGGCACGTCAGAACCTGGCCACCGTA
CAAATCAACACAAATTTAGATGAATCACATACAAGTAAGTCAGAAGAGAATACACATACAACAC
GGACAAGGTACAGTAAGGCTTTACCGAGTGAAGATATATTGCCCGCCCATCTGACGATCCATTT
TTTCTCCGAAACCC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021