Detail information of AT1G44910_circ_g.10


General Information
CircRNA Name AT1G44910_circ_g.10
ID in PlantcircBase ath_circ_006052
Alias NA
Organism Arabidpsis thaliana
Position chr1: 16980552-16980932  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method PcircRNA_finder
Parent gene AT1G44910
Parent gene annotation Pre-mRNA-processing protein 40A
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G44910.2:3
AT1G44910.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTTCAGGCTGCCACATAGAATTTGTTTATAATGTTTGTTATTGCAGGAATACATTCTTGACCTA
GAGAAGGAAGAAGAAGAGCTGAAGAGAGTAGAGAAAgaaagagaaaaggcagcggaggaacatc
ggcagtatatggcagactatcggaagtttcttgaaacctgtgactatatcaaagtatatcattg
tttgtgaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAAGAGAAAAGGCAGCGGAGGAACATCGGCAGTATATGGCAGACTATCGGAAGTTTCTTGAAA
CCTGTGACTATATCAAAGTATATCATTGTTTGTGAAGCTTATTCCTGCGAACCTTTCTGTTTCA
TAGACCTTGACATAATGCCTTTTATAATATGTGTTTGAAGGCTGGTACACAATGGCGCAAAATT
CAAGATAGACTGGAGGATGATGACAGATGCTCATGTCTTGAAAAGATAGATCGTCTGATTGGTT
TTGAGGTAAGTAACTTCATCAAGTAGTTCAGGCTGCCACATAGAATTTGTTTATAATGTTTGTT
ATTGCAGGAATACATTCTTGACCTAGAGAAGGAAGAAGAAGAGCTGAAGAGAGTAGAGAAA
Conservation Information
Conserved circRNAs NA
PMCS 0.183591295
Functional Information
Coding potential Y
Potential coding position 16980588-16980929(+)
Potential amino acid sequence MADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRVEK
EREKAAEEHRQYMADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRLIGFEEYILDL
EKEEEELKRVEKEREKAAEEHRQYMADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKID
RLIGFEEYILDLEKEEEELKRVEKEREKAAEEHRQYMADYRKFLETCDYIKAGTQWRKIQDRLE
DDDRCSCLEKIDRLIGFEEYILDLEKEEEELKRVEK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017