Detail information of AT2G40820_circ_g.1


General Information
CircRNA Name AT2G40820_circ_g.1
ID in PlantcircBase ath_circ_017682
Alias 2:17037203-17038188
Organism Arabidpsis thaliana
Position chr2: 17037203-17038188  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G40820
Parent gene annotation BEST Arabidopsis thaliana protein match is: myosin heavy chain-r
el /.../TAIR:AT3G56480.1)
Parent gene strand -
Alternative splicing AT2G40820_circ_g.2 AT2G40820_circ_g.3 AT2G40820_circ_g.4
Support reads 1/1/1
Tissues seedling;root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G40820.3:5
AT2G40820.5:5
AT2G40820.4:5
AT2G40820.1:5
AT2G40820.2:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGACACAAAACCTACCTCTCTTTGAAGTTTAACGGAATATGCAGACTTCTCTTGGATTTGACT
CTTTAAATCACGAAGCTCATGTTGCATACCGATCACctgcatggaggttgaatatatttctcta
gcctttgtgatccatcctcgggacagctttatcctcgcctttccaacagtaaatacatgggatc
gtgatgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCATGGAGGTTGAATATATTTCTCTAGCCTTTGTGATCCATCCTCGGGACAGCTTTATCCTC
GCCTTTCCAACAGTAAATACATGGGATCGTGATGCATGGTCTTGTCCATTCATCTGTGATATAA
CCACCTGCGAAGAATTTCAACATTTCTAGTTTTGTTAGAGCAAGAAATAACAACTGTTTTATGC
AAAATTCTCTTCCAAGGGGAAAAGGAAAGTTGTAAACATACGGTGAATTCACTGTTAGATTTGC
GCAGGAGTGATTCAACGCGTGACTGCAAGCCAGCAGCTGTAGAAATTGTGATTCAGTTAGCCAT
TTTGTTTATCATATCTCCATTATAATCTGTATTTGGACTTTGCAGAAAGTACATAATAATAGCA
AACTCTTGTAACACCAACCAGTATTAATTGGACCATCGGTTGTAACGGTGAACTTCTGGCCATT
TGAAACAATGTCTGCTTGTATCACTCGCCCGACATCAAATGGTTCTGGAGCATATACTGACCGG
TTGGCACCTAAGATTGGAAAAATGTGAACTGCTCAGTGCTCAAGCTAAAAGCTCATGTCCTATA
AGTTATTTTGAGAACATAATAAGATTTGCCAAATGATCAGGGAAAGAGAGAATGCGAATTACCA
GATATAGCTTCTCTTCGACTAGACTCAGATGCTGCACGGTACCAATGGATTGAGCATTTGGAAA
TATCTATACCACTGTCTGAGGAGGCACGGATTCTTAGGCACGAGCCAAGACTTTGTGCACCATC
CAGAACATACGGACATGACTTGGACCCCTCAGCTTTCTTAATTATTGCTATCTATATGGATATT
TGCAATTTTTAGAGTCAAGACAGTTTGTTGATGAAAGAATAACAAGAAGTAAACAAGACACAAA
ACCTACCTCTCTTTGAAGTTTAACGGAATATGCAGACTTCTCTTGGATTTGACTCTTTAAATCA
CGAAGCTCATGTTGCATACCGATCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.173246095
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020