Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d046226_circ_g.1 |
ID in PlantcircBase | zma_circ_009970 |
Alias | zma_circ_0003251 |
Organism | Zea mays |
Position | chr9: 73246006-73246601 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d046226 |
Parent gene annotation |
multidrug resistance protein associated1 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d046226_T004:2 Zm00001d046226_T001:2 Zm00001d046226_T007:2 Zm00001d046226_T014:2 Zm00001d046226_T016:2 Zm00001d046226_T017:2 Zm00001d046226_T011:2 Zm00001d046226_T010:2 Zm00001d046226_T013:2 Zm00001d046226_T003:2 Zm00001d046226_T006:2 Zm00001d046226_T008:2 Zm00001d046226_T015:2 Zm00001d046226_T009:2 Zm00001d046226_T002:2 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.176327908 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
73246540-73246008(-) |
Potential amino acid sequence |
MNYASESILGVVTIRAFAATERFIYSNMQLIDTDATLFFHTIAAQEWVLIRVEALQSLTIITAA LFLVLVPPGAISPGFAGLCLSYALTLTSAQIFLTRFYSYLENYIISVERIKQYMHLPVEPPAII PDSRPPTSWPQEGRIDLQDLKRHYVSSARELVRLNGTTKAPVMNYASESILGVVTIRAFAATER FIYSNMQLIDTDATLFFHTIAAQEWVLIRVEALQSLTIITAALFLVLVPPGAISPGFAGLCLSY ALTLTSAQIFLTRFYSYLENYIISVERIKQYMHLPVEPPAIIPDSRPPTSWPQEGRIDLQDLKR HYVSSARELVRLNGTTKAPVMNYASESILGVVTIRAFAATERFIYSNMQLIDTDATLFFHTIAA QEWVLIRVEALQSLTIITAALFLVLVPPGAISPGFAGLCLSYALTLTSAQIFLTRFYSYLENYI ISVERIKQYMHLPVEPPAIIPDSRPPTSWPQEGRIDLQDLKRHYVSSARELVRLNGTTKAPVMN YASESILGVVTIRAFAATERFIYSNMQLIDTDATLFFHTIAAQEWVLIRVEALQSLTIITAALF LVLVPPGAISPGFAGLCLSYALTLTSAQIFLTRFYSYLENYIISVERIKQYMHLPVEPPAIIPD SRPPTSWPQEGRIDLQDLK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |