Detail information of BGIOSGA034587_circ_g.1


General Information
CircRNA Name BGIOSGA034587_circ_g.1
ID in PlantcircBase osi_circ_009533
Alias Chr11:1175023_1175491(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr11: 923826-924294  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA034587
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034587-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTGCTTGCTTTATTGAGGCCACAGGAAAATCCTGCTCAAAGGCAACCCAAGCATCCAGAGTGCT
GTAAACACCTTCTTTTGAATCTTCCAGGTCAAGCAGccttgacaagtctatctagcttattatt
tctgtagtaaatacccaacataagacggcaaaaccgccatggaactgattgtagatcatgggct
atcttaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGACAAGTCTATCTAGCTTATTATTTCTGTAGTAAATACCCAACATAAGACGGCAAAACCG
CCATGGAACTGATTGTAGATCATGGGCTATCTTAAACTCCCAGATTCTGCAAGCTTCATCCGCT
CTATTATCCTTCTCAAGTGCACACACTAATTGCTCATATGTTCTGATAGTCTTCCCTTGTCCTT
TGCTCAACATCCATTTTATCACCTAACCATGCAGTTAGCCATTTATTTAATTCTGGGTGCACAA
ACGAAGCCTCCTTTTCAAATTAGATCCACAAAGTTAAATTAAAATCAAGCAAATCATAATGTCC
GAAACCTGGACGATTCTATGCCACTGTTCCTCCTTTTCAAGAGCTACAAGTGCTTGCTTTATTG
AGGCCACAGGAAAATCCTGCTCAAAGGCAACCCAAGCATCCAGAGTGCTGTAAACACCTTCTTT
TGAATCTTCCAGGTCAAGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021