Detail information of Niben101Scf07114g01001_circ_g.1


General Information
CircRNA Name Niben101Scf07114g01001_circ_g.1
ID in PlantcircBase nbe_circ_007635
Alias NA
Organism Nicotiana benthamiana
Position chrNiben101Scf07114: 180541-183560  JBrowse»
Reference genome Niben.genome.v1.0.1
Type   ei-circRNA
Identification method DCC
Parent gene Niben101Scf07114g01001
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CC-GC
Number of exons covered Niben101Scf07114g01001.1:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACATATACCATGACATATCGTGGTTTATGCTCAGGTAGTGCAGCAGTACACTGAGCCACGACA
CGCCAAAACGAGTCTTTATCTTCACCGCCTGCAAGAcagcaacctccatggcgttgcataccca
ttcaagaacgtcaccttcggggaactacaggtcaaatttaagaagccatcacaatccgcagaac
aaaatagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCAACCTCCATGGCGTTGCATACCCATTCAAGAACGTCACCTTCGGGGAACTACAGGTCAAA
TTTAAGAAGCCATCACAATCCGCAGAACAAAATAGTTGTATTAGCAAATATAAGATGCAAGCAA
AACCAGTAACAAAATAGTAATGATAATAATATGTTGCAAAAGAATATTTGTTCTTTTGATTTGA
GATAAAGTTAGAGCATGTTCTCAAGTTTGTGTCAATTGAAATTGCTTTCAACATCCTATCAGAT
CAAACTTAGCCAAGTGCCTTACGAATATGTGACAGAAAATCATTCAATAAGTTTAGAAAGAAGA
CCTGCGATATAAAGAGAACTATTTCCTTAAACCGGGAAAAAAAAAACTAACACGTAGAGAGCTC
TTCATAACGGTCTTAGCATGTGGTATATAGCAGATAAAGGTAGGAGAAGTTGTTCCCATCAATT
GCTTTTTGGATATACCAGGAGAAATGCATAGTCATTGAAATCATTTTGTTTGTAGTGGGTTATT
CATTACCATTTTCTGAAGAAACTGGCAAACAAATCTGCAAAATTAAACAAATAAAAAGATCAGG
TAAATAGAAGCATTAGGCATGACGCCAGAAAATGAGCATGAGATAGTGATACATAATAGTGAGG
GGAAAATCTATTCAGAGCAAGAGGTGAACATACTCTGGAAAACGTCCTTCAACAATTGAGGAAT
GCAAGTTTCTGCTAAGCTGCATAGATTGAATACCTCAAGGTAATGGCTGAGCTAATAGACAAAC
GAAAATATCTTTTAAAACCTCAGTGTTTGTTACCTTCATCATATAGTATAAGTTGTGATATGAC
AGAAGTTGAGATCCCATGGCATCTTTAGTAACAAGGCAATGAATGTAAGCCCTGGTATACTTTA
CAGACCTGTTGAGAGACAACTGGTATTTGAAACATGTATAAATGGAAAATAAGAACATTACTAA
TCAAGTGTCGTCTATTTCAATTTACCATACAATCACATGTGGGATCAATAGGACGCATATCATC
TGCCATTGCCTTGTGTTTAAGTTTTAGAACTCCCTGTATCATGCCAAAGCAAAAGCATTATTCC
ACTTCAAAATCAATGGTGGATGTTATTTTCTTTATAAATTGTTTAATTTGGTTTTCAGGGCCCA
AATTTATGACACATGGCGAGGAAAATTTGTGGAACATATTTCACGAAAATAAAAACAAAAATTA
AATCAACAAGAGATAAAGTCAGATGATAAATTAGAGGAAAAACCGATTTTCTTAAAACATCCTA
AAGTTTTCAAATCATTGGAACTACCAGTCTCCACAAACACAGACACATAAGGCATAGTCAAGAA
TACTTTATCACATGGAAGAAGGGAAGTCAAAGTAGTGTGAAAAGAGCAGCGTGCACAAATTCAA
CTCAAAATGGTTTTACTACTAAAAGGAAAGACCAATTGTATGTGTTAGATATGTAAATATAGTA
GAACTCTAGTTATAGTAGAACTCTAGGTTATGTGTATTATATATAGGGCTCATTGTATTATGTT
TAATCTCAGTTATATTCTTCTCCCGTGCTTTCTCACATGGTATCAGAGCTTTGGTGAGATAATT
ATCGTTGTGCGTCATTCCAACGACATCCGGGAAGAAATAACTCGGTCACCGTGCAATTTTCCGG
TGACCTAAGTGACTAATTACGTCAAAGTCACTAATTATCAGTGTTGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAGATGTGTATAAGAGACAGGTGTTAGATATGTAAATATAGTAGAACTCTAGTTA
TAGTAGAACTCTAGGTTATGTGTATTATATATAGGGCTCATTGTATTATGTTTAATCTCAGTTA
TATTCTTCTCCGGTGCTTTCTCACAGTATGTACACAAACAGAATACTTTTTAACAGCACAGCAC
AATATAAACTATATGACTACTTTTAAGATCCACATGTTTATCGATCAAGAATACTCAAAACATT
GATGTTGGGTTAGAATATTAATAGATTCCTTATCAAGCAGTATGAGAAAATAGTATTCTATTGA
TTTCAAAAGAATGCTTACTCTGTGATCACCACAACCTATTAAGTAATGACTATTTAGAGGTAGT
GGGCAGAGAAAATTACCTCAGGTACAAGAGCTGTGCCAAAGCGAGCGGTACGAGTGGGATAGAC
ACAATCATACATGTCAGCACCTAAAGCACTGCATACCACAATGTCTAGTGGGTAACCCACCCCC
TGGAGTACAGCAGTCGAAATTCAGAAGCCAGAAGGCATCACATCTAAAAGCAGAGAAATTGAAA
ATAGATGCATCATATTAAATCTACCAAAGAACATAAGAGTGACATATACCATGACATATCGTGG
TTTATGCTCAGGTAGTGCAGCAGTACACTGAGCCACGACACGCCAAAACGAGTCTTTATCTTCA
CCGCCTGCAAGA
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019