Detail information of BGIOSGA023981_circ_g.3


General Information
CircRNA Name BGIOSGA023981_circ_g.3
ID in PlantcircBase osi_circ_007306
Alias 7:22234968|22239206
Organism Oryza sativa ssp. indica
Position chr7: 22234968-22239206  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA023981
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA023981_circ_g.2 BGIOSGA023981_circ_g.4 BGIOSGA023981_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA023981-TA:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGGTGGCGCAGGGAACGTAGGTGACGGTGCTCCCGGAGTCCACGATCAGCGCGAACTCCTGC
GAAGGCGTCCCGATGTACAGCCTCGTCGTGTAATACcaggcaaaccactaggagcaggagctgg
tgccatatctccctctgaatctgaaggtgctgatgaaggaacttcactaatatggagcctctcc
cacaactc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGCAAACCACTAGGAGCAGGAGCTGGTGCCATATCTCCCTCTGAATCTGAAGGTGCTGATGA
AGGAACTTCACTAATATGGAGCCTCTCCCACAACTCTGAACAGTTAGTTTTCCAAAAGCCAATC
TTCTCATTGTGACGGTCATAGGTTACAAGAGTATTACGGACAACAATTCCTGCCAGTAAGATCA
TTATTCTTTAGACACTCAAAGCGGGCAAGGTTTCAAAGTACATAGAGCCATGCAAACTATTAGA
ACATTCATGTACACTGTCTATAAATCAAATAAAAGGTCAAAATTAATATAAGAAAAGTATAAAT
CTCTCTAAAGATTGATCTGCTTGACTCTTTAAGGGATAGAGAAGAGAACAAAAACACCATACTT
TCCTTTTAGAGACAAAAGAGTGCATAAATACAACAAGCAGCCAAGGTCTATTATACTGTTGGCA
GAAAAAAAATTTCTTGGTACAATACCGTATGTTGGCTTGCAACCGGCAATTAATAAAGAGAATG
CCTCCTTTGTAGGCTCAACCACTTTTAGAGTTTTAACTGATAATTCCATGAACACTTTGCTTCT
AACCTCAAATTTTCTGAAATCAGGAATAACTCTTAAGGATGCTTGTTTTTGGATTGTTCACAGA
TAATTGCATGTTTGTTATCTATGAAAAAAATAGAGGGTTTATGCATTCTTATATTCATAAAATG
ATAAACAATGTTGGTATTTCACAGCCATGGTCTTCGGATTACACACCAATCATTGCGTACTTGC
ACACGTAAACTATTGGATTACGAAATTGAATAAGTGCAGCCAAGAAATTGCCATAGTGATGAAG
GAACAAGCTACACTGACACAAAAGTTACCTCAGATTATACCTAAAAAATATTGAAAAGTGCATC
AGCTGGTTATGCTGAAAAAGATAAGGAGACCATTGTTATATAGTAGTATTTTCTACAAAGAGAG
TTACTTGGTTTTCTACTCAAGTTTCCAGCAGACGCGAGTGTATAAGCTGGTCAAAGACTCATAG
TACAGGTGCAAATGTTATTCAGCATACACTAGTAACAAGTTATATGCGAATAAAGTAGAGATAG
TGTAGTCAGATGATATAAATAAAAGAAGTCCAATGGAAATTTTCTTGAAGTTCCTCGTTAGAGA
CCAAGAGTTGAAGATCTTACCCCCTAATAGTGTTGTCGGATCTTTTCCATTCTGAAACACACCC
AAGCAATAAGCCCCTTCAACCTTCGAATGCTTTATTTTGAAACCGGCAAGAAGAGAAGACAAAA
CATGAACTCAACAACAGGCAAAGCAAAAAAATAATGGGGTGTCATAATTCATCAGAACAGGTCT
AAGCTTGGAACTTCTCATACCCGGAACAAATAGTTTTCAGGTGAAAGCGAAAGCTTCTGCCCAT
TTCCAAATACCATGTCAACATCTGGAAATACCTCTGATAATTGGGAGACGTTCCTGAAGGTAAA
GTGATAAGATAAGAACATTGATGATGAAAACAAAGGGGGTAGAAATTGTTATCATGGTGCAAGA
GTTACCTTCCAGCACCTGCAAAGCAGATGTCTTTATAATTTGGATCTGGGCCACGGATTTTCTT
CAGAGAATTTACTTTATTTGTCACCTATCCATTAAAAACATAATTATTCCAGCATACTTTTCCA
GGAGTGTCCATTTTAAAGATTTCCATTTTCAGGAATGACAATGAAGAGCTGAATAAAAACAAAA
TGAAAAGAATCTGCAATGCGACAACCAAGATAGCAGAAAAGGTGCCAAACAGATTGGCTCGTAC
ACATGCAAAACCAGGTGTTGCCAAAGTAGGAGTAAATTTTTCTGTCTTAACATCTGAAACTAGA
CAGGTTAATTGCAAAATTGGCATCTAGGGAAATATATTAAATATAAAATAGTAAAGTAGCATAG
TTAGCAGATGGTAAAAGCAATTCAAAAAAGGTAAAAGTGGAGGAGATATCATTTGATAACTTAC
AGCATCTTTAAATGCAACAAATGCTTGTTCAGGCAGGTAAGCATATGTGGTTCCACTATCTAAG
ACAGTGCCATGTTTGCTGTTGAATATCTTTGGGTCTAACCGCAATGCCTTTCCGGCAACATGTA
TTTCCTTTAACTCAATGTTGTAATACGGGCTGTTGACAATCCAAAATTAATAAGGAAATGTATT
AAATATACAGAACATTAGAAAACCTTCCTCCAGCAGGCTACTAAAAGAATCTTCAGTCTGGTGT
GGAAAAAACAAAAATGTATAATACCTGCGGACAGGGTTTGAATGAGAGAAAACCATGTCAGGAG
GAGCAGGCATCCCACCAAGTACCATAGTACCACCACCAACATCCATTCCACCATAGCACAGAGA
GAATGAATCACTAATGACACCCTTCTCAACAAGCTGATCCATTATGCTAAGTTGACCACGGCCC
AGCCCCATAATACCATCAGCATGTTGACTGAACAAATCTCCTGTTTCGGTGTTTTCACAGCCAA
AAACAGCACGCTGTGGCTTAAGTTCACTTTCTTTGCCAAATGACATAATGTCCTCGCCAAGCAC
ACCACTGCTGGAGCTCATTTCAGCATACTGCCTCTCATAAGTGCATTGACTCCTCTCATTATCA
CAAGTACAATCAACATTGCATTTTACTGGTGAATATGTACTGGAGAGATCAGGTTGGAATCTTG
GATCCTACAACATGCCAAACTTTAGTGTATACTAGAGAAAGTTGATTTCTAGATAGTTAAAAAG
GAAACTTCAAGTGGGAAAAAGGTGATTTTCTCAATGGGTATGATCAAATACACATCTTAACTTT
TTTTATCACGTAAGATATACATCGCATTGGAGAAATCATGCCAAAATATTGTCACACTGTTTGT
ACACACATTAATATAAATTAAATAGTATAAATGCTTAAACTTTTACATGTGCCTCAATGATGTT
AGGTGATTCACTCTGCAAACATGACATAGAATAAGAGGATGGTACAACAATGGTGCCATCTAGA
ATCTAGAAAAATCACAAGTTATGATAAGAATGATACAATTGTGTCAAAAAGATGCAACTATGCA
AGTGACAAGAACAGTTCTTTTTAGAATCAGGTTATGGGCTTCCCATTAGTCGTGGACTCCTCTA
TTACTTATCAGCAATAGTAGCAATCTACAACTGATGGAAGATTTCCAAACTACTCAGATTATAC
AGGACTACAAGAGAACAGTGGCCTGACTAACCATGCAAACAGTTGCCCAAGAAAAGGCTGGGTA
TGTAGCAGAAAGAAGTGAAAAATACAGTAACATATTTGCCTTTTCATATGGATATGTTTTCTAT
GTGACGTTTGAATCTAAAGCCCAAAATTCAGAGAACGATAAGGGAGCAACAAACATCAAATTGC
ATAGCAATACCAGATGTGTATTCTGGACATGGCAGTGGGTTTACTTGGTAGGAAAATTGGTGTT
AATACAAATTGTTTCCACTGCTTTGCCATAAACAATCCAATACACTTCCCAAATCTACTGCCTG
ATAATTGTCAGCAGTCAGGAAAGACATGGGACTCATTTGGCATGGAGAAAAAACAAAGAAGAAT
CGACTAACTGTTGACAACCAGGAACGCCAATGGTTTGAAAACAAAATGGTGCAAAATTTGGCTA
AAATGATGGCTATCAAACAAATAGTAATTCTTGTTGGTTGTGACCAAGATTGGCATGGGCTTTG
TTGGATGTTGACCTCTATTAAATTCTGAGGCATTCACAATTGAGAAAAAAAGAAGCTACATCAT
CGTCGCTCGGTTAGTTTTAATATACCCTGCAGGTTGTGGAGGTGCTCTTTGCGTACCATACACT
TTATCCACATCGTATAGCTGGAACTTCCGAACCTATCCAAATGGAAACGTGTATTTTCCAAGAC
TTTGAATTTTGGAACAATAAATGTCTATGCACACACCCAAGCCCGACAAAAATGTATCATTTGC
ACTGGAGTCAATTGTCCAACCTGAATGGTCAAGCGACAGTTTGACATATGGGAATCCAATATCC
ATACACGCGACCATCACCAATCCTAATTAAACCCGTCACACACAATTCAAACAGGTAAGCAGAG
AATTTGAGGAATCCAGGCCGACCTGGTGGTTGCCGCACTGCTCGCAGGTGGCGCAGGGAACGTA
GGTGACGGTGCTCCCGGAGTCCACGATCAGCGCGAACTCCTGCGAAGGCGTCCCGATGTACAGC
CTCGTCGTGTAATAC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 22237547-22239156(-)
22235116-22237921(-)
Potential amino acid sequence MSSSSGVLGEDIMSFGKESELKPQRAVFGCENTETGDLFSQHADGIMGLGRGQLSIMDQLVEKG
VISDSFSLCYGGMDVGGGTMVLGGMPAPPDMVFSHSNPVRSPYYNIELKEIHVAGKALRLDPKI
FNSKHGTVLDSGTTYAYLPEQAFVAFKDAVTNKVNSLKKIRGPDPNYKDICFAGAGRNVSQLSE
VFPDVDMVFGNGQKLSLSPENYLFRHSKVEGAYCLGVFQNGKDPTTLLGGIVVRNTLVTYDRHN
EKIGFWKTNCSELWERLHISEVPSSAPSDSEGDMAPAPAPSGLPGITRRGCTSGRLRRSSR*(-
)
MTVTMRRLAFGKLTVQSCGRGSILVKFLHQHLQIQREIWHQLLLLVVCLVLHDEAVHRDAFAGV
RADRGLREHRHLRSLRHLRAVRQPPE*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021