Detail information of BGIOSGA015217_circ_ig.2


General Information
CircRNA Name BGIOSGA015217_circ_ig.2
ID in PlantcircBase osi_circ_014284
Alias Chr04:17960483_17962714(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 16065474-16067706  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA015217_circ_ig.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   TT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCAGGTTCTCACTATCATGTATTTCTGAATTTGTGCAGGTTCTTGGCAAATAACTCAGATTTCC
TTTAGCACATCATTTCAGGATAAAATGTATAAGAGGgatctggtggttgtctttttctcaggat
gggacataatggatctagcggtgttatgaataaggttgagtacaacaactgattggatggaaac
tggaacat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATCTGGTGGTTGTCTTTTTCTCAGGATGGGACATAATGGATCTAGCGGTGTTATGAATAAGGT
TGAGTACAACAACTGATTGGATGGAAACTGGAACATCTCCATTTCCCCTTGTCCCTTTGCATCG
GCTACTCTTTGATCTTTGCAGGTACTCTTTCTTTCATCCCTCTACTGCCTACTCTTTACTCTGG
TACTTTGTTTAACCTATGTATACCATGTGCTTAGGATGCATCAGATGAACCTATCCAGTAATTA
ATTTTTTTTTTTGCATTTTTACACTCTGTTGTCAAATTACAGACTTCCAATATCATAAATCACA
TGTTATATCTGATCTTTCAGTGTCTGAGTATCTCAGACCACATATTATATCGGTTCTTTCAGTG
TATATGTGTATGGAATTCTAGCTTGTGCCCTTTTCTATCTTTGTTGCAATTAGCAATGACCAGA
ATGGGAGAAGTAAGTAAATCTGATCTGACTTTGACATGTATAGGTTCTTGCTTCATCAAACGAG
TGCATTATGATAATATGGATGTCCTGGCCTCCTGGGAGGCCTGCTGGACAATCAATATTGTTGT
GGTGGTTGAAGTATTATGCATAGCAGCCCTTATTTTGCTATCAAAATGTTAATCAGGTACATCT
TAATGTTGATTCCTGTATATTTCGGATGTGTGCTCTGATTACTGGTGGTTTTCCATATTAATGC
TCTTTTCGCCAATATACAATATTATTTTCTCTCAGTGATGCTCTGCTCATCCCTTACATGGGTT
ATATGTCGACTGCTTTTCCTGTCTATTTTATCAGTTGCTCACACCATTTTTATTTCTTGCAACC
AAAAACATCAACATGCCACTTATGCTATTAAATAAAAATTTCTTTTTGCTAATGCTATCAACAA
GCTAACACTGTCAAAAGTAACCACTAAACACCCTATTTTGCAGTTTGTGGTATTCTCTGTTTTT
AGTAATAACAGATAAGTTCAGAACATGAACATTTACTGTTTCATTAATTGTTTTTAATTTTCAT
ATACATGTAGATATTTCTGGCAATCTCCCTGCATTGATACCTGATCAAGTCCGGAAGCTGAAGA
AACTCAGCGTGCTAACTTTGGCTGAGTCAACAAAGGTGCAAATTTGGGCTGATACTATCTAATG
TGCTATGCATTTTTTTTTCTTATCCTGTGTACATAAAGTTGCAAGGGAGTGTTTAGATCCTTGG
CAATGGGGATTTTAGCCTTGCATAGCAAGGGGAGTTATTGTTTGGTAGTAAAAGAAAAAAAAAA
TCTAACTTTCCCAGGCAATCTGGCTTAACGAGTGTTAGAAAAAACTTGTTGTCAAAGGAGAGAA
AAAAGGGGCCCATCTTCATCGACAAGCATGTGAGCGTGCACTGCTGATGGCACCAAATATCGTG
CCTCACTACCTTGCTTATGTGGGCCATAGATGAAATGAGCAAGTTTAAGCCAGGCTGAGCAAAG
ATAATTTAAGATCCAAATGTATCCTCCGAATTGTTTCATCAAATAATAGCTGGTTTGCATGTTT
ATTATCTAGGTTTTTCATTCTTCTTCCTTTACATATGATGGGAAATAGTTCTATGCAGCTATAA
GTGTTAAGTGATGGCAATTCTCTGAAAAAAATAATAATCAATGCCAGAAACAAGCTTCTTCCAT
TCTATTATGTGTGCCCAATTTAGTTTTACACTATCTGTAAATCCTATCTTATTCTTTATCTGCA
TAGCCTGTTTGAGTGTGCACTGGAAGTAAAATTCATGTAGTATTATCTTTTACCTTAAAACTCT
GTTCTATGTTTTTGCTTTAGACGGTCCTAAATGTGCTTGGTTTTTATTCTCATTTCTATTCAAG
TGCTACCATATGATCAACTCATGCAAGAATTGGATGTTTCCAATGTAATAGAACTTGAAGATTT
CATCATCAATGAGTGCATGTACTCCGTGATAATCCTATCTGTAGATCCTATCTTATTCTTTATG
TCGTTCTCATATGTGACGTTGACCAGTGGGCAGTGGCACATACGATGTGTGGGATGGCTGCCTG
CCTGTCTGCTTGCCTCTTACATCATTCCTTTCCCTTTATTTTTTCATGCTGTCTCTTTCTCCCT
TTGTATGTGTGTTGCAGCCTTGCAGGTTCTCACTATCATGTATTTCTGAATTTGTGCAGGTTCT
TGGCAAATAACTCAGATTTCCTTTAGCACATCATTTCAGGATAAAATGTATAAGAGG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021