Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d022586_circ_g.5 |
ID in PlantcircBase | zma_circ_009522 |
Alias | Zm07circ00107 |
Organism | Zea mays |
Position | chr7: 180363030-180363803 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d022586 |
Parent gene annotation |
HEAT repeat-containing protein |
Parent gene strand | + |
Alternative splicing | Zm00001d022586_circ_g.2 Zm00001d022586_circ_g.3 Zm00001d022586_circ_g.4 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d022586_T021:4 Zm00001d022586_T006:4 Zm00001d022586_T030:4 Zm00001d022586_T011:4 Zm00001d022586_T028:4 Zm00001d022586_T015:4 Zm00001d022586_T020:3 Zm00001d022586_T002:4 Zm00001d022586_T019:4 Zm00001d022586_T003:4 Zm00001d022586_T010:4 Zm00001d022586_T024:4 Zm00001d022586_T036:4 Zm00001d022586_T012:4 Zm00001d022586_T014:4 Zm00001d022586_T033:4 Zm00001d022586_T016:4 Zm00001d022586_T038:4 Zm00001d022586_T008:4 Zm00001d022586_T026:4 Zm00001d022586_T001:4 Zm00001d022586_T025:4 Zm00001d022586_T029:4 Zm00001d022586_T023:4 Zm00001d022586_T034:4 Zm00001d022586_T004:4 Zm00001d022586_T022:4 Zm00001d022586_T018:4 Zm00001d022586_T035:3 Zm00001d022586_T037:4 Zm00001d022586_T013:4 Zm00001d022586_T005:4 Zm00001d022586_T031:4 Zm00001d022586_T009:4 Zm00001d022586_T032:4 Zm00001d022586_T017:4 Zm00001d022586_T007:4 Zm00001d022586_T027:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.119940181 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
180363576-180363800(+) |
Potential amino acid sequence |
MDACSSCFEQRTIFTQQVLAKALNQLVEQIPLPLLFMRTVMQAIGVFPALVLPVFPSIVNLPID KFQSAISRILQGSPRNGPSLDPSEILIAIHVIAPDKEGIPLKKVMDACSSCFEQRTIFTQQVLA KALNQLVEQIPLPLLFMRTVMQAIGVFPALVLPVFPSIVNLPIDKFQSAISRILQGSPRNGPSL DPSEILIAIHVIAPDKEGIPLKKVMDACSSCFEQRTIFTQQVLAKALNQLVEQIPLPLLFMRTV MQAIGVFPALVLPVFPSIVNLPIDKFQSAISRILQGSPRNGPSLDPSEILIAIHVIAPDKEGIP LKKVMDACSSCFEQRTIFTQQVLAKALNQLVEQIPLPLLFMRTVMQAIGVFPAL(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Han et al., 2020 |