Detail information of AT2G02970_circ_g.1


General Information
CircRNA Name AT2G02970_circ_g.1
ID in PlantcircBase ath_circ_012627
Alias NA
Organism Arabidpsis thaliana
Position chr2: 866106-866493  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G02970
Parent gene annotation Probable apyrase 6
Parent gene strand -
Alternative splicing AT2G02970_circ_g.2
Support reads 3
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02970.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCTAAAAGTCCAGACAAATGCTTTTGTGTGTTTGCGTCGAGGTTATACCCTTTTGGAGCACAAG
GGTCTGTAAATATTTTTTCCCGTGTAGGTTCCACAGcttagaggtgtaaaagaagttttctgtc
gctaaaaatcttcctcgaagcttaggcgtgaaagttgatccaatagaacaatgctgatacgagc
atttctct
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 290
Transcript exons: 866106-866203,866302-866493
CTTAGAGGTGTAAAAGAAGTTTTCTGTCGCTAAAAATCTTCCTCGAAGCTTAGGCGTGAAAGTT
GATCCAATAGAACAATGCTGATACGAGCATTTCTCATTTCCATCTTGCAAGATTGTTAGTGCAG
CAGATCGACACTGTGAGTAATTACCCCCAGCTTGAAAAGAATCTGAGAGTCTGCTTTCTTCAGC
TAAAAGTCCAGACAAATGCTTTTGTGTGTTTGCGTCGAGGTTATACCCTTTTGGAGCACAAGGG
TCTGTAAATATTTTTTCCCGTGTAGGTTCCACAG

Genomic sequence CTTAGAGGTGTAAAAGAAGTTTTCTGTCGCTAAAAATCTTCCTCGAAGCTTAGGCGTGAAAGTT
GATCCAATAGAACAATGCTGATACGAGCATTTCTCTGCACTCAAAAGTTTGAGTAGAAATCAGT
ATCTATTAAAGACAACAAATAAACTAATACAAGGAATGAAAATCCAGCAATAATGATTAATATT
CTACCATTTCCATCTTGCAAGATTGTTAGTGCAGCAGATCGACACTGTGAGTAATTACCCCCAG
CTTGAAAAGAATCTGAGAGTCTGCTTTCTTCAGCTAAAAGTCCAGACAAATGCTTTTGTGTGTT
TGCGTCGAGGTTATACCCTTTTGGAGCACAAGGGTCTGTAAATATTTTTTCCCGTGTAGGTTCC
ACAG
Conservation Information
Conserved circRNAs NA
PMCS 0.261236966
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017