Detail information of Zm00001d026163_circ_g.1


General Information
CircRNA Name Zm00001d026163_circ_g.1
ID in PlantcircBase zma_circ_010348
Alias zma_circ_0000075
Organism Zea mays
Position chr10: 140143423-140146598  JBrowse»
Reference genome AGPv4.38
Type   e-circRNA
Identification method find_circ
Parent gene Zm00001d026163
Parent gene annotation extensin-like protein
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Zm00001d026163_T002:3
Zm00001d026163_T001:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGTGGGCGGCACGCCCACCTTGGCCTTGATCAGCCCCAGAACATTAGCGCACACGCCCAGCTTG
AGCGCGTCGCGGGGGCACTTGCCGAACGAGGCCGGCgccggcgtcggggtcggcgtcgacgggg
tggacggggtcggcgtggggcagttgccaccgcaggcgctggccatggcgaacaccaccaggtt
cacggcga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCCGGCGTCGGGGTCGGCGTCGACGGGGTGGACGGGGTCGGCGTGGGGCAGTTGCCACCGCAGG
CGCTGGCCATGGCGAACACCACCAGGTTCACGGCGAGGAACAGCGCGACCGAGGCCTTGCCTGC
CATTGCTGCAGAGTACAGAAAGCACTTGCTTGATCACTAGCGCGAAGCAGAGGTGTGCCTGCCC
TTAGTATTAACTGATCACTAAGCGCTTGTGATGGTTCGTGGTGGCGCTTGATTGTTGCATTTAT
AGGAGAACCATCGGCGCAGTGCCGATTATTGTAATAGCAGTGTTGTTGTGTGAGTTTACATTCC
CGTGAGCATGAGTGCATGTGAGGGCGATTATTAATTAGATGGCTGATCAATGCAGAACAGCGCA
AGTGGCCAAGATTGCTCCACTGGTGGATGCATGTTGATGTTTGTTCTCGCTTGATGGTTGATCA
TTTTTATTCAGTTTAGGACGAACTTGTCATATGGGTTGGCTGCTTGTATCTAGTAACGTGATCG
AGTGCTAAACATCAGCAGAGGTATCATGGTGATGCATGGACGGTGGACGCCCAAGTTGTTGAAC
AGTTGAAGTATTTTTTTTTCTGCACTTCACGGGATCCAAGCGCAGAGCTATGCATAATTGCATA
TAGCGGTGGGTACGGGTGCACCCTTGCATGGTAAAACTGAATGCGCTCAGAAGGCAATTGCAAT
CACTAAAATTTGCTTTAGCTCTGTTCCTGATCGGGTCAAGGTTTATTATGTTCAGTTGGAACAT
TCAAAGTTAGAGGCTTGAATTTGCTTAAAAAGCATTCCCACAAACAACGGTGGGTGCCCTTTTT
GTATGACGTACTGTTGGCTAGATGGTTCCGCTTGTTTATGAAAAAAGAGTGTACTAATAAATTT
ACCCGAACTCTTCACTACCGCAGATAACTCTTTTGCCGAGTGCTTCATGCACTTCACAAAGTCC
AGAAAACACTTGGCAAGCTCCAAGCTTAAGAAACATAAATGACGTGCATAAGTTCAAAAATAGT
TTAATACAAGACTAAGATGTCCAAAAGAACGGTAAATTATATTAAAATAATACTTCTTATAATA
GATCAATGCTATCGAATAGCCCACTTCACTCTTTAAGCATACATAAATTTTCAATTATATCATA
AAATTTCTACGTCCTACTGCGTTTCAACCATATTTCAGCATGACAATTATAGTAATACAAAACA
AGAATTGAATTGCTTGAATGTAAATGTTCAAAGTAAAGAAGGATTATTAATATGATGATGTTTT
ATCGAGATATCAGAGAGTCAACACTCCTCATTGATCCTTGTTAGAGCACCCATGTAAGTGTGTC
GCTCCCCCTTCATCCGTGCAAGCAGGATCAAATGCTCTCTAGAAGGAACGTGGGCATCTAAGAG
AGGGATGAATCCGAACAACTATTCACGCTAATTTAGGCTTTTAATTGAATCTCTTAAGCAAAAC
CTATACAAATATATAACCAAGAAAGCTAGTGCAACTAAGGTTTTGTTTAAGTGTTGCTATCTCT
ATAATGGAGTTATGTAACCTAGGTTTTCAGTCCTACTAACTAGCATATAACTAAGTTAGGAAAG
GTAAAGCACACAACCAAAGTTAGCAATATAAATGCGGAAGCTTAAATGAGATAGAGATATAAGT
CATGTGGACACGCTGATATTTTTACTAAGGTATCAAGAAATACGTAAGCTTCTTCCTAATCCTC
GTTAGAGCCCCTACGCAAAGGGTAGCCCACACGAGGGCCAAGCTCCTAGCCATGTAACTCCGCA
GATAGTCACGAGCCTTCACCACTCATAAGTGGCGCTCCGCATTTGGCCTCTCTCGGATGCTCTT
GGTTGTCTTCACTATCGAACTTCTGACTGAAACATCATGACCTCGTTCGCTCTAGTATACGGTG
GAGGCCGCAGCACAAACATGGTTAGTGTGATCTCACAAGATACAACCCTTACTGGTACAACTCT
ACGAACACGCGCAAGTGTCAATGCATATAATGGTGCGCACAAGCATCAAGGGTTTGAGGGTGTC
TAGCTCAACTAGGCATAACCTAGAGCAAGTGTCATAGTGACGGTCTAACTGACTTAAGTACTTT
GCAAAACACCTACACGAATCACCGAGTAACCTTAAAGCACTTAGATGTCTAAGAACTAATAGAT
CGGAGTCTCAATTCTCTTGCTATGTTTTTCAGCACAAAACTTGAGAAATGACCCATTGTGGTGC
TATTTATAGCCCTCAAGCCCAAAAGAGCTATTGAAAGGCGTGGTAGAGTTTTTTGGACAGGAAC
CGATATGTATGGCGTGCCACTAGACACGTCTAGTGCCTTCTACATGGACTAGCTAACGGTTGGA
AGCTAGCCGTTGCCGATCGATTAATTATGGATAATTGCCTCAAATGTATCATGCATGAATACTA
GTAATTCGACGTCTCAAATGTATATGGATCGTTGCCTCAATTAATTATGTTTTATGTAGTGCAT
TTGCAAACGTGTATGAAAATGAAATATGACTCATAACAAAATCTGATATTAGAACAATATGCAC
ACATATTTCGAACAATATATAAGCTTTATTCATCAAGCAGATTGCCGGATACAAATAAAAGAAC
AAAAATCTTAATAGTTCAGGGTCACGTCCATTCAAAGGACGAGACACTTACATAAAAGAAACAC
CCAAAAGCGAAAGCTGCTCATCAAAACGGCCGGCTCTACATACGTAGCTACTAGCTACTACGCG
TGTTCGTGCGGATGCTATGCATGCAGAGGTAGCAGAGCTAGCTAGTAAGCACGTACGTACGTAG
CACATGATAAGAAGGCTGCATTATTGAGACAGTAAGACGAAGAATGGCAAGCAGAAGAGCACGT
CGGCATGCTCCCCGCGGCTTATAGCTTAGAGGCACTTGAATCCGGTGGGCACTCTCTTGCCGCA
GTGGTTGAGGATAAGGCTGAGGTCGACCGGTAGGTTGAGCTTGATTCCGAGGACCTCTCCCTTG
ATGGCGGTGCAGAGGCACACGGCGGCCTCGAGGTCGACGAGTCCCTTCAGCAGCGGGCAGCATG
GCTCCGTGGGCGGCACGCCCACCTTGGCCTTGATCAGCCCCAGAACATTAGCGCACACGCCCAG
CTTGAGCGCGTCGCGGGGGCACTTGCCGAACGAGGCCGGC
Conservation Information
Conserved circRNAs NA
PMCS 0.189613329
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b