Detail information of Os04g0630800_circ_ag.1


General Information
CircRNA Name Os04g0630800_circ_ag.1
ID in PlantcircBase osa_circ_025496
Alias Os_ciR256
Organism Oryza sativa
Position chr4: 32086133-32091027  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os04g0630100_circ_ag.1 Os04g0630400_circ_g.1 Os04g0630600_circ_ag.1 Os04g0630600_circ_ag.2 Os04g0630600_circ_ag.3 Os04g0630600_circ_ag.4 Os04g0630800_circ_ag.2 Os04g0630900_circ_ag.1 Os04g0630900_circ_g.1 Os04g0630900_circ_ag.2
Support reads 175
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACGGCGTGCGTGACCGGCGGGAACGGGTATATCGCTTCGGCGCTCATCAAGATGCTGCTTCAGA
AGGGATATGCTGTCAACACGACAGTCAGAAACCCTGatgacatggcgaagaactcccacctcaa
ggacttgcaggcacttggccccttgaaggtcttccgcgccgacatggacgaagaaggaagcttc
gacgatgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATGACATGGCGAAGAACTCCCACCTCAAGGACTTGCAGGCACTTGGCCCCTTGAAGGTCTTCCG
CGCCGACATGGACGAAGAAGGAAGCTTCGACGATGCCATCGCCGGCTGCGACTACGCCTTCCTC
GTCGCCGCTCCGATGAACTTCAATTCAGAGAATCCTGAGGTGAACAGCTAATTAACATCACTAT
TGACTCTGATACTCTGTAACTGATGTGCTCTACTAATCTTGATTTCCTTTTTTTTTTTTTTTTT
TTGCGATGTTGATGGTGGTGGCAGAAAGATCTGGTTGAAGCCGCCGTCAATGGAACGCTCAACG
CGATGAGATCGTGCGCGAAAGTAGGGACGGTGAAGCGCGTGATCATAACATCGTCGGACGCAGC
GATCTCCAGAAGGCCGCTGCAAGGCGACGGGTATGTGCTGGACGAGGAGTCCTGGTCTGACGTC
GACTACCTGAGAACAGAGAAGCCGCCAGCCTGGGTGACGTTCCTCTCTCTTGACATTTTCACAT
CTCCATCTTATCCATAAATTCAAGAAAACTTTTACCGTACAATATATACTAATATATGCTACTA
CTAGTATGTGCTGCCAGTACAAACAATTCAAAGATTTTTATGAATATTTCCTTGTGCTTTAATA
TATTATAGTATAAAATTAAAGGGGGTAAAATTGTCTTTCCATACTATTGGATGAGGGTAATTAT
GTAAACTCACAACTTATAGCGAAATACTCCCTCCGTTAAAAAAAAATCTCGTAACATCCTAGAG
TGTCTAGATTCGTTTTACTAGAATAGTAGGATGTGTCATAAGAGGTTGAGTTATTTAAGGACAG
AGGGAGTAGAGATAGGCATTATTTTCACCACCATGAGACACTGCGCTGTTGCAAACTAGAATGA
AAATTACTAAAATACCATTTTTAATTTGATAAAAATTCTTAAAATACTCAGTATATTGGACCGA
AAAGTTCTTTAAATTTACCAACGAAAATAAGCTTGCACCCAATTGGCAATGGCATTTGCGTTTG
CAGGCGTACAGTGTGTCCAAGGTGCTTTTGGAGAAGGCCGCATGCAAGTTCGCGGAGGAGAACA
ACATGAGCCTCGTCACCGTGTTCCCGGTGTTCACCTTGGGCGCAGCGCCGGCGCCGGTGGCGAG
GACGAGCGTCCCCGGCATCCTCTCCTTGCTATCCGGTGAGCTAGAAGCACCAGCAACAGCAATC
AAATCAACAAGCTAGCTCCCACAAAGGGCCTGTTTGGGGGGAGCTTCTAGCTGCTGCAGTATAT
TCTAGAATTAGAAGTTGCTCTAAACAGTTCAGCTTTTGATTTAGATTATAAGAAGATATAATTG
TAAAATCCAAAAAATGAAGCTGGGAAACACAATTTTTCCAGATTGTAATCTTAAAACTCCAAAC
AGACCCCAAGTCTCAACACTCTTTGCAACGCGTGTTACACAGTTTAAGTTGGCTGCTGTTTTTT
TACTACTACTTCTCAGGTGATGAGACGCATCTCGAAGTCCTGAAGCCCCTGCAGTGGGTCACCG
GCTCCGTGTCGATCGTTCACGTCGACGACCTCTGCCGCGCCGAGATATTCCTCGCCGAGAAGGA
GTCATCGTCATTGTCGTCGGCAGAGTCGTCGGCGAGGTACATCTGCTGCAGCTTCAACACCACC
GTCTTGGCGCTTGCCCGTTTCATGGCCGGAAGGTACCCGCAGTACAACGTCAAAACCGACCGGT
ACGATCGAATTGTTGACCAACTTGGAAATCCAAAATAGATAAATATTGTTGTGTTCGATCTGAC
GAGCGAGTGATCGTCTCTGTATCTTTGCAGCTTCGACGGGATGCCTGAGAAACCGAGAGTCTGC
TGTTCGTCGGAGAAGCTGATCAGGGAAGGGTTCGAGTTCAAGTACACGAATATGGGCGACATAC
TCGATGACCTTGTAGAGTACGGCAGGGCCCTGGGAATTCTACCACATTGAACGAATAGCTGATG
CTGCTCTACCTTCAACCTAGCTGTCACGAGGACCGAACTGGAGTATGCGCTTGCGAAATAAGTG
ATCAGTGTTTTTAAAGAAAAAAAAATAGTACAGTGTTTTAAGATGAGCCTAATACACAGTGGAT
AATGGCAATGAAGTTTAATACCCTTAGAGCATATCCTTCGTTCTTGCATGTCATTTATATATTT
TTTATAAAAAAATTTAACAAGAATCATTTGGTTGATACGTAAGAAATTAGGGGATGTCCATTTT
GAGGGACCTAAGGCTCCGTTCGTTGGTCTGTTAGGGATGCCACTTGTTTTTTTAGCCGCTTCAT
AAACTGTTAAAAGATGTATATTATGGACATGTTTTTAAGTTTCTTTAAAAAATCTAATAAAACC
ATTTGGCATATTTATAGTAGTTAATACTACATCCATTTCATATTATAAATCATTTTGAACTTTT
TTTGTCAAACATTTTCAGTAAAAGGTTTGACTAAGTTTATAGAAAAAATTAGCAACATTTACAA
CACAAAATTTATTTCATTAAACACTACATTAAATATATTTCATTAAACACGACCGTGCCTGGGC
CGTGCCGCCCGGATGGCCATCTATACATCCGGTCATAGATTTGGTTTTTATTTGTAGTACTCGT
CAACAACTAGCATGTGTCACATTCGATACTTGGTTGATTTTTTATGAGACGAAAGGAGTACTCC
TCAATCAGATATCAACCAAACAACCACCCACTTTCATATCAACTGAACAGTTCTGTAAGGACAG
TTCCGTAAATGGTCCATCCTTCTTTCCATAGATGGTCCAACCCCGCACATAGTGTTGCATCCTC
GTCCTAAAATAATTTGAAATGTTTGGATCAGGGACTAAAACTTTAAGCCATGTCACATCGGATG
TTTGGACACTAATTAGAAGTACCAGAACATTAGTGTGCCGGTTGGCACACTTTCTTTATAGCCC
GATACATTGTTTAGCGTGTGTTTGAAACATGAAAATTTTGTAAGATATTTTTAGCATTTCGTTC
AACTTCTATGTTCCATTAAATATTGTATTCTCTTGCATATCGTTCTGAGCATAATCTCCTGTAA
TGTTAATTTGGGATTGTGTGTTCTCTATGTTTCTGGTGGACGATTAATTATAGATGTTGAGTTT
CTAACAAATTTTTGATATAATTAAATACTATAAAGTATTAAGAAAGTAGAAAGTAGGTGGAGTT
AAATAATAGAAGGTTCTCTGAAAAAAATATTAGAAGATTAATATTTTTTTAAAAAAAGGAGTGA
TTGTAATAAAAAAAAGTTACAGAAAATCGTAAACTTACAAAGCTTGCTCTCAATAATCCATAAT
ACTCTTGATGTCCACAAATATTAGGTGGAAGGATCCAACTCCTAAATGCTAGAAGTAGAATTTG
AAGTTAAGTAGTGGCCTATTGACGGTCTTTGTGTTCACTCCACCCCTCATTTTTCTAGGTCACT
ATAGTCTGCTCCACTCTCTTTTTTATAGAGCAGAAAAAACTTTGTTGAGCTTTAGCTACAGAAA
AGCTGGAAGGTCCTGCCAAATTGAGCACTGCGTGTCGTATCACTCACCTCTTGATTTAATTTTC
TTCATGTCTTACTTCTAACCATTCTGTCATTTTTCAACTATATTTTATTTAATAAATGGCATTA
TAGTTTTTTCACTCCATACTTATCTCTCTAAGAAAAAGATTGGGAATATTTTATATTAGTGGAG
GAAGTACACTTGGTTCATAAGATACGATGGTAACTGGAAACTGAAAAAAGGAGGAATTGAAATG
GTCAATTGACTTGGTGCTACACGGTGATACGATAGCTGAGGACCCTGTTGCTCATATTTTTTAT
TGGATTTCCCTTTTTTTTTTTAATAATTCTGAGTTTTCTTCTATCGGATATTTGAATGCCTCTA
GGAGTGATGTTGTTGCAAAGGACTATAATCTAGATGTATAAGTCTATGGATCTAGATACTTTAA
CTAGACTTATCTTAAATTATGATTTATATTTGAGTGGTTCTAGAAAGTCTCTATGTTTATTGCG
AAGTGATGTACAGTTAGAAGCTTCTGGAAGCTGATTTTTTTTTTTACCGGGTGGGAACAGCTAG
ATGTTCTGGATGCTGTGTTGTTAAGGTACAACTTTTTCTTAAAAGAAACTGCTAAGGTACTACT
TGCTTTTAGAATTATCACATAACACTGTAGTTTTCTATTTTGCTTGATCTTCTGTATTTTTTTC
CTTAGACAAAATTCATGATTTATTTGATAAGCTAGGGGCGCCACGTGGCCCAATCAAAAGCTGG
CATAACCACTGGCTTTAGATTAATAGATAGATTAAACGTAGACTAATGACAAAACTCATTACAT
AACCCTGGACTAATTCGTGAGATGAATCTATTGAGCCTAATTAATCCATGATTAGTCTATGTGA
TGCTATAGTAAACATGTGCTAATTATGAATTGATTAGGCTTAAAAAATGTCTCGTGAATTAACT
CTCATTTATGCAATTAGTCTTGTAATTATTCTATGTTTAATACTCTAAATTAGCATCCAAATAT
CCAATGTGACATGGAATAAAGTTTACTCCCTGAATACAAACATACCTTTGCATCTAAATAACAA
AGATTTCTTATTGGTGACAACTGACAAGCATATCCTATCAGATGAACGTCAGTGACAGTGACTG
TACTCTTGTACTCTTACAACCGCCGTCTTCATTCCAGTAAGCTATTTCTCTCAGGAGGACGTAG
TGGAGCCTGGAGGGGACGAAGTAGCCGGCGGCACGGCGATGTCAGCGGTTGGGATGAAGACGGC
GTGCGTGACCGGCGGGAACGGGTATATCGCTTCGGCGCTCATCAAGATGCTGCTTCAGAAGGGA
TATGCTGTCAACACGACAGTCAGAAACCCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.744770329
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015