Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT5G24810_circ_g.7 |
ID in PlantcircBase | ath_circ_040297 |
Alias | At_ciR4587 |
Organism | Arabidpsis thaliana |
Position | chr5: 8521462-8522141 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | AT5G24810 |
Parent gene annotation |
ABC1 family protein |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | 3 |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT5G24810.2:3 AT5G24810.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.176807985 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
8521697-8521464(-) |
Potential amino acid sequence |
MDVLFTDFVDEPLATASIAQVHRATLANGQDVVVKVQHDGIRAIILEGVQQKEKWIKKSKVPAL WDKAHDRNAKRVLNLIVELEGLWVKLGQYLSTRADVLPQAYISLLTQLQDSLPPRPLQEVCRTI ERELGNSMDVLFTDFVDEPLATASIAQVHRATLANGQDVVVKVQHDGIRAIILEGVQQKEKWIK KSKVPALWDKAHDRNAKRVLNLIVELEGLWVKLGQYLSTRADVLPQAYISLLTQLQDSLPPRPL QEVCRTIERELGNSMDVLFTDFVDEPLATASIAQVHRATLANGQDVVVKVQHDGIRAIILEGVQ QKEKWIKKSKVPALWDKAHDRNAKRVLNLIVELEGLWVKLGQYLSTRADVLPQAYISLLTQLQD SLPPRPLQEVCRTIERELGNSMDVLFTDFVDEPLATASIAQVHRATLANGQDVVVKVQHDGIRA IILE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |