Detail information of BGIOSGA020495_circ_g.1


General Information
CircRNA Name BGIOSGA020495_circ_g.1
ID in PlantcircBase osi_circ_006981
Alias 6:32883414|32885884
Organism Oryza sativa ssp. indica
Position chr6: 32883414-32885884  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA020495
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA020495-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGCTGCAGCCTCCCTAGATTTTGCTTGCTTTTTCTCTCGGTTGGTCAGAAGTTGCCCTGAGAA
GTTGTAAATGATCAACAGTACTAAACTCAAGGCACCcagctgtgccgatcctggctggaagaat
atcgcaaatgtgtagccgatccctgtcacgcagtacaccagcgccacaagaactacgtagttct
cccatatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGCTGTGCCGATCCTGGCTGGAAGAATATCGCAAATGTGTAGCCGATCCCTGTCACGCAGTAC
ACCAGCGCCACAAGAACTACGTAGTTCTCCCATATCGACGACCTTGGGTTGTTGAAGAAGTAGA
ACATGGACAGGTAAACGATCGGCTTGATGATCGTGTTGAAGTGATCTATTGTGTCTTTCGACAT
GAAGTACGCCAACGAGCTCATTCCAGATGCTCTCTCCCTCCAGTAGTGTATCTTCTCCAGAGAG
AATGATCTCAGCGCTCCAATCTTGCACAGCAGAGCTGCAATTAATATATCCCACGCTTATTACC
TTATTTTTACTACTTACTTATTTTCTCATTACGTATTATATAAACATTATTTCTCTGAAAATAA
TTCATGACTCCTTTCCAGGATGGGCTGAGAAACTTACAGACGGCAATGACAGTGTATGTGTAAC
CGAGTGCTCCAAACGTCTCGTCGCTCACTTTAGCTAATGTCCCTAGACATATACCAGCAAGGCC
CAGGATCAGATAGTCAACGCCTTGTATTCTAGCTTCACGGAGCCTTTGCTTGCCACACCTGAAC
AGAATGAAGAAAACAAGAGTAATGCTTATATATACATATTTAAGAATGGCAGTGATATATAGTA
AGAAAAAATACTCCATTCTTTTACCTCCCCAGGTAGTACTTGTACTGCCTGAGAATGCCAGGAG
TGCATCGATTAGATAAGTTTTGAGAAGATTTGTTGTAATCATACTCATCCTTCTTCTGCCCAAC
TATGTCCTTGACATTGCCCCACACTTCACCAGCAATAGACTGCCCAGTGTCACCGCCAGGGGTA
AGATCCCCTCCTCCCCTAAACGACGATTCTGCATCAGAACCACTCTGCAGCATATCCCGTGGAA
CTTCATACCCATTGTGCAGCATCCATCGCAGAGGGAGATCTTTGGCATTAACTGCAACATTTGC
GTTTGGCTTCACAATTCCCTCCAAGATGTCTATGTAGTAGTCTGGCGGGTTCACACGATCTGGG
ACAACAATCCCCAATCCTGAAAAGTATTCCTCCACTTTCTTCACAGGTCCATGGTAAACCGTCA
AGCCACCTTTCGCGAGAAGTATCAAATCATCAAACATCTTATACAATGTATAGCTGCAAAAGAA
AATAAACTCAGCATAAAGTTGCATGAGTGAGTGGTGCATATAAAGTTGTGGAGAAAAAGAGCAA
ACAACCTTACCTGGGTTGATGAACCACCATAGAGATGTTCACACCTTCAAGAGCTTCCCGCCGT
AGTGCACGAAGTAAAAGCAGAGACGAAGAGCTGTCCAAACCAGACGTTGGCTCATCTAAAATCA
ACACAGAGGGTTCCATGACCATTTCTAGCCCAACATTTACTCGTTTACGCTGGCCACCAGAGAT
GCCACGCTGTTCGACAGTTCCAACCAAAGAATCACGAACTGCTTGCAGTCCCAAAGCCTCGATA
ACTCTTTCCACAACAAGAACCTTGTCAGCTTTTGACATGTCAGCAGAAAGCCTGTGCAAGATAA
AATATATTCATCAGTCCAAGTTCCCTAGCCACTAGTGAATCCATCACAGGATCTATTGAAATAT
ACTACTACTACAAAAATAGTACCTGCATCGTGCATTAAACCAAAGATTCTCCTGAACAGTCAAG
TTCCCATGGACAATGTCATCTTGTGGGACAAAGCCAATGATTTTCTTGTACGCACGGATGGGTT
CCATTTTCCCATTGATAAGTACCATACCTGTTGTCTCGCATCCAGTTGCCTTACCTGCAATTGC
ACTCAAGAATGTGGTCTTCCCTGCACCTGATGGGCCCATCACAGCAGCTACCCGACCAGGCATA
AGCTTTCCGGTCACAGACCTTAACAGTTTTTTCTTACTCCCCTTTAGTTAGAGTAAGGTCTTTG
AAAGCAATCTCAATTCTAGGTCTGGTCCTGATATCTTCATCGGTGGCCATAGATATCACACCTG
AAAAGGTCAGATTTTTATTCTGCTGTTCCATTGCCTTTTCCTTCTCAATCTGTCCATATGCATA
CTTGAAAATTTGGCTCTGAGTGTGTGCATGCCTCCCTTTAGTTTTCTTTTTTTCTCCTATTTCC
ACATTGAAGCCTTCTCCTTTTTCCGGGTTCTCTTCAAGCGAGCGCATCATGTCAGTAAGATTAC
TCTTCTTTTCTCCTGATCCTTTCGATGGCTCCACATCAGTTTCAACCGCTCCTTTGGATGGCTC
GTGTGTCCTAAGAGTTTTCTTGCGCGAGAATGTGCGGGACAGCGATGACTGCAGCCCAACGGCG
TGCTTCTTGGCAACATCTTTAGCTGATTTCCACCTTTCACGAGCCATGGCAGTCTCTTTTGCGT
GTCTTGCTGCAGCCTCCCTAGATTTTGCTTGCTTTTTCTCTCGGTTGGTCAGAAGTTGCCCTGA
GAAGTTGTAAATGATCAACAGTACTAAACTCAAGGCACC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 32885766-32883416(-)
32883512-32885801(-)
32885857-32883453(+)
Potential amino acid sequence MARERWKSAKDVAKKHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDM
MRSLEENPEKGEGFNVEIGEKKKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKT
TFLSAIAGKATGCETTGMVLINGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSA
DMSKADKVLVVERVIEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTS
GLDSSSSLLLLRALRREALEGVNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYF
SGLGIVVPDRVNPPDYYIDILEGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESS
FRGGGDLTPGGDTGQSIAGEVWGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRC
GKQRLREARIQGVDYLILGLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEK
IHYWRERASGMSSLAYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVT
GIGYTFAIFFQPGSAQLGALSLVLLIIYNFSGQLLTNREKKQAKSREAAARHAKETAMARERWK
SAKDVAKKHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDMMRSLEEN
PEKGEGFNVEIGEKKKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKTTFLSAIA
GKATGCETTGMVLINGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSADMSKADK
VLVVERVIEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTSGLDSSSS
LLLLRALRREALEGVNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYFSGLGIVV
PDRVNPPDYYIDILEGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESSFRGGGDL
TPGGDTGQSIAGEVWGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRCGKQRLRE
ARIQGVDYLILGLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEKIHYWRER
ASGMSSLAYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFA
IFFQPGSAQLGALSLVLLIIYNFSGQLLTNREKKQAKSREAAARHAKETAMARERWKSAKDVAK
KHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDMMRSLEENPEKGEGF
NVEIGEKKKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKTTFLSAIAGKATGCE
TTGMVLINGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSADMSKADKVLVVERV
IEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTSGLDSSSSLLLLRAL
RREALEGVNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYFSGLGIVVPDRVNPP
DYYIDILEGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESSFRGGGDLTPGGDTG
QSIAGEVWGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRCGKQRLREARIQGVD
YLILGLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEKIHYWRERASGMSSL
AYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGS
AQLGALSLVLLIIYNFSGQLLTNREKKQAKSREAAARHAKETAMARERWKSAKDVAKKHAVGLQ
SSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDMMRSLEENPEKGEGFNVEIGEK
KKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKTTFLSAIAGKATGCETTGMVLI
NGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSADMSKADKVLVVERVIEALGLQ
AVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTSGLDSSSSLLLLRALRREALEG
VNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYFSGLGIVVPDRVNPPDYYIDIL
EGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESSFRGGGDLTPGGDTGQSIAGEV
WGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRCGKQRLREARIQGVDYLILGLA
GICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEKIHYWRERASGMSSLAYFMSKD
TIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGSAQL(-)
MGELRSSCGAGVLRDRDRLHICDILPARIGTAGCLEFSTVDHLQLLRATSDQPREKASKI*(-)
MINSTKLKAPSCADPGWKNIANV*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021