Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | BGIOSGA020495_circ_g.1 |
| ID in PlantcircBase | osi_circ_006981 |
| Alias | 6:32883414|32885884 |
| Organism | Oryza sativa ssp. indica |
| Position | chr6: 32883414-32885884 JBrowse» |
| Reference genome | Oryza_indica.ASM465v1.42 |
| Type | e-circRNA |
| Identification method | find_circ |
| Parent gene | BGIOSGA020495 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | BGIOSGA020495-TA:6 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
32885766-32883416(-) 32883512-32885801(-) 32885857-32883453(+) |
| Potential amino acid sequence |
MARERWKSAKDVAKKHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDM MRSLEENPEKGEGFNVEIGEKKKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKT TFLSAIAGKATGCETTGMVLINGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSA DMSKADKVLVVERVIEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTS GLDSSSSLLLLRALRREALEGVNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYF SGLGIVVPDRVNPPDYYIDILEGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESS FRGGGDLTPGGDTGQSIAGEVWGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRC GKQRLREARIQGVDYLILGLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEK IHYWRERASGMSSLAYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVT GIGYTFAIFFQPGSAQLGALSLVLLIIYNFSGQLLTNREKKQAKSREAAARHAKETAMARERWK SAKDVAKKHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDMMRSLEEN PEKGEGFNVEIGEKKKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKTTFLSAIA GKATGCETTGMVLINGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSADMSKADK VLVVERVIEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTSGLDSSSS LLLLRALRREALEGVNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYFSGLGIVV PDRVNPPDYYIDILEGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESSFRGGGDL TPGGDTGQSIAGEVWGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRCGKQRLRE ARIQGVDYLILGLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEKIHYWRER ASGMSSLAYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFA IFFQPGSAQLGALSLVLLIIYNFSGQLLTNREKKQAKSREAAARHAKETAMARERWKSAKDVAK KHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDMMRSLEENPEKGEGF NVEIGEKKKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKTTFLSAIAGKATGCE TTGMVLINGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSADMSKADKVLVVERV IEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTSGLDSSSSLLLLRAL RREALEGVNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYFSGLGIVVPDRVNPP DYYIDILEGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESSFRGGGDLTPGGDTG QSIAGEVWGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRCGKQRLREARIQGVD YLILGLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEKIHYWRERASGMSSL AYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGS AQLGALSLVLLIIYNFSGQLLTNREKKQAKSREAAARHAKETAMARERWKSAKDVAKKHAVGLQ SSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDMMRSLEENPEKGEGFNVEIGEK KKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKTTFLSAIAGKATGCETTGMVLI NGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSADMSKADKVLVVERVIEALGLQ AVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTSGLDSSSSLLLLRALRREALEG VNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYFSGLGIVVPDRVNPPDYYIDIL EGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESSFRGGGDLTPGGDTGQSIAGEV WGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRCGKQRLREARIQGVDYLILGLA GICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEKIHYWRERASGMSSLAYFMSKD TIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGSAQL(-) MGELRSSCGAGVLRDRDRLHICDILPARIGTAGCLEFSTVDHLQLLRATSDQPREKASKI*(-) MINSTKLKAPSCADPGWKNIANV*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Huang et al., 2021 |