Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA020495_circ_g.1 |
ID in PlantcircBase | osi_circ_006981 |
Alias | 6:32883414|32885884 |
Organism | Oryza sativa ssp. indica |
Position | chr6: 32883414-32885884 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA020495 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA020495-TA:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
32885766-32883416(-) 32883512-32885801(-) 32885857-32883453(+) |
Potential amino acid sequence |
MARERWKSAKDVAKKHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDM MRSLEENPEKGEGFNVEIGEKKKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKT TFLSAIAGKATGCETTGMVLINGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSA DMSKADKVLVVERVIEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTS GLDSSSSLLLLRALRREALEGVNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYF SGLGIVVPDRVNPPDYYIDILEGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESS FRGGGDLTPGGDTGQSIAGEVWGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRC GKQRLREARIQGVDYLILGLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEK IHYWRERASGMSSLAYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVT GIGYTFAIFFQPGSAQLGALSLVLLIIYNFSGQLLTNREKKQAKSREAAARHAKETAMARERWK SAKDVAKKHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDMMRSLEEN PEKGEGFNVEIGEKKKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKTTFLSAIA GKATGCETTGMVLINGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSADMSKADK VLVVERVIEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTSGLDSSSS LLLLRALRREALEGVNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYFSGLGIVV PDRVNPPDYYIDILEGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESSFRGGGDL TPGGDTGQSIAGEVWGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRCGKQRLRE ARIQGVDYLILGLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEKIHYWRER ASGMSSLAYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFA IFFQPGSAQLGALSLVLLIIYNFSGQLLTNREKKQAKSREAAARHAKETAMARERWKSAKDVAK KHAVGLQSSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDMMRSLEENPEKGEGF NVEIGEKKKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKTTFLSAIAGKATGCE TTGMVLINGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSADMSKADKVLVVERV IEALGLQAVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTSGLDSSSSLLLLRAL RREALEGVNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYFSGLGIVVPDRVNPP DYYIDILEGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESSFRGGGDLTPGGDTG QSIAGEVWGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRCGKQRLREARIQGVD YLILGLAGICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEKIHYWRERASGMSSL AYFMSKDTIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGS AQLGALSLVLLIIYNFSGQLLTNREKKQAKSREAAARHAKETAMARERWKSAKDVAKKHAVGLQ SSLSRTFSRKKTLRTHEPSKGAVETDVEPSKGSGEKKSNLTDMMRSLEENPEKGEGFNVEIGEK KKTKGRHAHTQSQIFKYAYGQIEKEKAMEQQNKNLTFSGAGKTTFLSAIAGKATGCETTGMVLI NGKMEPIRAYKKIIGFVPQDDIVHGNLTVQENLWFNARCRLSADMSKADKVLVVERVIEALGLQ AVRDSLVGTVEQRGISGGQRKRVNVGLEMVMEPSVLILDEPTSGLDSSSSLLLLRALRREALEG VNISMVVHQPSYTLYKMFDDLILLAKGGLTVYHGPVKKVEEYFSGLGIVVPDRVNPPDYYIDIL EGIVKPNANVAVNAKDLPLRWMLHNGYEVPRDMLQSGSDAESSFRGGGDLTPGGDTGQSIAGEV WGNVKDIVGQKKDEYDYNKSSQNLSNRCTPGILRQYKYYLGRCGKQRLREARIQGVDYLILGLA GICLGTLAKVSDETFGALGYTYTVIAVSLLCKIGALRSFSLEKIHYWRERASGMSSLAYFMSKD TIDHFNTIIKPIVYLSMFYFFNNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGSAQL(-) MGELRSSCGAGVLRDRDRLHICDILPARIGTAGCLEFSTVDHLQLLRATSDQPREKASKI*(-) MINSTKLKAPSCADPGWKNIANV*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |