Detail information of GLYMA_15G131300_circ_ag.2


General Information
CircRNA Name GLYMA_15G131300_circ_ag.2
ID in PlantcircBase gma_circ_009307
Alias novel_circ_000272
Organism Glycine max
Position chr15: 10556000-10560080  JBrowse»
Reference genome v2.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing GLYMA_15G131300_circ_ag.1
Support reads NA
Tissues root
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCCTTTGAGTCCAGATTATAAGGGAGGTTTGGATTGTTGCCCTGATAATACCACGTGCAGGCTA
AACAAAGGCTTCAAGGGTCCAAAGAGAACCTTATACcttaaatacacagtgaagtggttcagtt
gggacaactacgtggtgccccttaagatttatatacttgatgtgactgatgttttgaacgtgtc
caaaggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTAAATACACAGTGAAGTGGTTCAGTTGGGACAACTACGTGGTGCCCCTTAAGATTTATATAC
TTGATGTGACTGATGTTTTGAACGTGTCCAAAGGAGGGACTCCAAAGCATAATTGCGAGGTAAG
TCAATTAAGTTTAATAATACTAACACCTCATGTATTGGTTTTAAAGAGAGTACACCTGTTTATT
TTTACTTCTTTTTTTATATATAATGATCACATTGAGATTTAAATTTAAAATTTTATGTATATTA
TTCAAAATCTCCCCCCATAAGTCAGTCCTAATAATTTTATATATAATTGTTTTTACCTGTGATG
TTTATGCTTTTTTATAAAAAAAATATACATACTCCTTCCATATTAGACAGATTTAAATTCTGAA
ATCATTAACTGATGGATTTAAAATTTCATTATATCTTCACCAAGATTTATTTAATCTTATATTG
TTAATTTCATTTACTTGGTTAAGAGATAATATTTAAATCAATCATATCCGTACAAGTAATTTTT
TTTTTGTCTAAATCTATACAATTATTAAATAAGGATATGATTGGAAAAGAAATTTGACCAATCT
AAATTTCTAGAAAGAGAATAGTCTTAAAATAAAAAAAAAATGCGAGAAGTCTATAACTTTAGAC
TGAAAAGTATCTCGTTTACTTTTATATATGAACTACGGAGGTCGTACAAAATATTCTTAAAATG
ATTTTTATATTTAAAGAGTACACCTGTAATTAAAATTAACTTTTAAAAAAGTCATTTTTTAATT
ATTATTATTATTATTATATGATAAAATTATGGGATAAGGGAATCAATCACGCAACTTTTGAAAA
CATATGAATTCAAAGGCGTTATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NACAAGAGTTTCTTTATAGTAAAAAAATTACAAGAGTTTCTTTATATTAAAAAAAATTACAAGA
GTTTCTCGATATTTTCTTCAGATGCAATCTTGCAAGTTAAGAAAATATTCGGCCAAAAGTTAAA
TAAATCATATATGCTGATGACTTGTTAAGAAATTATAATATATATGCAAAATATTGAATAAGTC
CATCCCCAATTACTCTAGAAAAAGTCCATCCCCAATTACTCTAGAAAAAGTCCATCTTCAAGAC
GATCGCAATTGGCGAGAAATTGTCCAGGTGAGTTGACAAAATATACATCAGATTATCTATTGCA
TAAAATATTGGCTTAAATATTTTTTTAATGTATGATATACTTCGAATTTTGTTTAGTTTTTAAT
AATTTTTTGTCCTTAATAATTTTTCTATCTAAATCTGTTTAAATAGCACTTCAAAAGGTAAAAT
AATTTTTGAGAGAAGACCCACATCAGCTGAAAAGTAACCAATAATGTGTACTTTTTAATCTTTT
TATAATTAATAAATCGACATTAATAATAAACTCTTTCTTAAGCTTTTATACCAAGGAAATTTAT
AACTGTCTAGTATATACATGGCATGATCTATCACGAGTTAAAAAGAAAATCAAGACTAAAATTG
CGTATGGTAATGAAAAGGGTTCATCTTTGTTTATACTCATTAACAAAGTATTTTTTTAGTTTCA
TATCTTCTAGAGTTTTTTCTTCTATCCGCAGAAAATTGTAGTCCCAGTAGAATATATAAATGTC
AAAGCCTTTTCGTTAGTCTACGATCTTGCCTTGTTCCTCGTAAATTTGCAACCCTCATTCCTTT
CTATTAATTTATTTATTTTAATTAAAAGCATTGAAACTTCAAACATACACACACTTTAAATTCA
ATATTCATGTTTATAAACGTCATGGCTTAGAGCATCCGCAATTAATGCACAACTCCATCTATCG
CTATATAAATCTTTTGTTCCAAGGTTAACAATTGAACCACTCTAGTTGAAATTACCAGTTACTA
TACTCTCTCTTTCTGAAACAATTTGCCCAATTGTTTGAGGTATGCTCATCTTCCCATGACTGCC
ACTAGTTTCCATTTCTTGCTGCATACTTACCAATCATCTTAATCATTAAAAGTTCACATAAACT
TGAATATCACTAACCCATTAGTCTCTGATCCATATTGACTTCATAAAACTGGCTATCAAGTTAA
ACATGGTTTGCTTTTGTTCGTTCATTAATTTTGTCTTACTATTATCTTGTTTTAAGTGTAACAC
AAGAAATATATATATATATATATATATATATACTTGCATGCATATGATACCTACTTTGTTTTAT
TTTCCTTCTACTTTTGTTAGTTGGCTTGCTGAAGATGGTACCCTTTTTAAAATTGCTTATAATT
AATTATCAATTCTTGCTAACAAAGGATTGTCCTAAACAGATGTTCAATATGAGATTTGTATCTC
AAGATTGGGTGGTTTCATGTGCACTAATACTTCTGGTGTCATGCACAACATACTCATCAGCTTC
TTTGGGGAAACCTGAGAACAACATAAAAACATCTGTTTTTAAATCACCCAAGATTGAGCTAGGT
CCAGGGTTAGTTTCAAACAAATTTTATTTTGATGTTGACTTTCCAAGAGGCCATATTGCACTCA
AGAGTTTCAATGCTGAATTGGTTGATGAGTCAGGGAAATCACTGCCTCTCCAAGAAACCTATCT
CCATCACTGGTTTATAATAAAATACCAACAGCCAAAAAATGTGACACACAATAACCCAACAGAT
AATATTGTTTATGTGAGAAACAGTGGCTTTTGCCAGGATGGTCCTCTTATCCAGTATTTTGGTC
TTGGATCAGAAACAAGAGGAACTGCCACTGATATTCCAGACCCTTTTGGAATAGAAGTTGGAAA
CCCTTCAGAAATTCCATATGGATATGATGAGAAATGGTTGATCAACGTGCATGCCATTGACACA
AGGGGTGTGGAAGATAGGTTGGGGTGCATTGAGTGTAGGTGTGACCTTTATAATATCACAAAGG
ATGCAGATGGTAACCCTTTGAGTCCAGATTATAAGGGAGGTTTGGATTGTTGCCCTGATAATAC
CACGTGCAGGCTAAACAAAGGCTTCAAGGGTCCAAAGAGAACCTTATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.296230499
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References lv et al., 2020