Detail information of BGIOSGA015326_circ_g.1


General Information
CircRNA Name BGIOSGA015326_circ_g.1
ID in PlantcircBase osi_circ_014249
Alias Chr04:16281997_16284661(ZS97RS2), Chr04:15725188_15727850(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 13407120-13409784  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2, CIRI2
Parent gene BGIOSGA015326
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA015326-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAAGTGCATTTTCTTGGCTGTATCATTGTGCGTCTCAAACAGTATACGGACGTCCTGTTTTAG
TTTATCAGCCTTTTCCATCATCCAATCCTCCGATCTcctttgtatggcttcattcagcttcctg
cattcctcgatggtggcatgatcatcatatgtgtcatccataaggacaatgaatacaattatct
tggcaagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTGTATGGCTTCATTCAGCTTCCTGCATTCCTCGATGGTGGCATGATCATCATATGTGTCA
TCCATAAGGACAATGAATACAATTATCTTGGCAAGGATCATCCGTGTGAGTGTTAAGTTTTCTT
CATAGAACAGCGCATAGGACCAAAGATATGACTCCACTGCACGATCTCTAACATGACTTAGCTC
GACATATCCATAAAGATCTTTCCACCACCTGAAAATTAAAATGATCGATTGTTTTAGGTGCTTG
TTTTGAAGTATATTTAAGATATATATATTAGATCATTAGAAGCAATGAGTATTAATTGATTTAT
GATAGTAATAATATGTACATAGCATATCAGGCATACCGAAAACACTAACAACATGAAGAGCCAT
ATTGCTAGTTATTTCAGTATATGTCACTAGTTATTGGATGTTTAAAGCCGCATAAAAGCCTCTA
GTGTATTGCTGCTGCAAATGCTGAGACAAAGATTGATAAAATATTCGGATATTCCTTGAAGGCT
AGCTGTCCTTCTTTTTTATCTGAGAGTGGACAAATTATATAGTAGTATAAACCTTAATTTTCTA
TTGTTCAATACTTGAAACTACAGATAAAGCGATACCTAAACTCGGATACACTAACTACCTCATT
AACATGACATATATTGACTACTTCTGGACAAAACATAAAGTTGTACATGTATTTTGTGATTAAT
TAACATTAAATTGGTTGCACAAACAAAGCGTCAATTTGTCTAAAACGAGGTACACATTTTATGT
ATTTACCATTCAGTACATCGAAGGAACACAACGTCTCTCCAGAATTTTGCACTTATCTATATCT
GTCTATCCTATATAGTCAGAGCTAAAATATCCACATGTATTGATTAAGTTCATCTGAAATACAA
CAGCCTTTGGATTCCTCCTTTACTTTGATCATAGCTACCCACATGTCATGTGTATTCAGAATTA
ACCACTTAGTATAATTGCTTTAGAGCTCAAGATGTATTGAGCAACATCTCACCTAGAAAGTAAA
AGCCATCGAATCCCTCTCATACTTGTCATAACTATTCATGAGTTGAAATTACACATCAACTTCT
ACGTAGCTCAAATTATAGTCCTTTTAGGTATGACGAGTAAATAATTTCCAATAGGTTTTTATCA
AGCTTTCCTAGAAAACAAATACTTCTAAATTCTCCACTGTAATGCACGGCCCATTCACTAATAA
CTAAATGTTCTCTAAATTATCTTTACTAACTGTAGAGCGAAGATCGAAAAACATATTTTGGTAG
TTGTATCGTGCACATACACAGATTTGAGATTATTACAGTGGTTTGTTTCTGTCCTAAAGGGCAC
AATCAATTACTTTCATGGTATATATTTACTTATTATATATATAAATATCAAATAAATACTCTTT
TTTTAGATAAAGGAAATGAATAAACCTGGTATCTACATCCACAAGACATGTACAAAGACAAAGC
AAAGAAAGACTCTTACTGAGAAAAAGCTTTGAGCTCCTTCAAGTGGACATGCTGCAGAAGGTTA
AATTCCAGCTTTGCAAGATCTAAAAGAACAACAATACATTCTTCCTCCTGTCCGTACTCCAGCA
TGTAATGCAACATTTCAACTCTCTTGTAGGTTCTCGGTAATGGTAAGTGTAGGGCACGGTTGAT
TTGATTATCTAGAGGGGCCTTGAGCCTACTTCCGTCCCTCATTGATTCGAGGTGGTGCCTTGCA
AAAGACATAGCTTCTTCAAGTTCTGGCTCATCATGGACAAGGAGGTGAGCTGCATTGTACAAAC
TTAATAATGCCCTTGGTTCATCAGCTATTGTATTGATGAACCTCCCATCCTCTCCTTTGAATTT
TTCGAATACATCTGCAAGGCAGCTAAATTAAATGTGGATTTTTCCTTCCAAAAGACACTAGATT
CCCTTTTCATACAATTTTTTAATACATCGGATATTCTTGACTAATTTTTATGTATATATTCTAA
TCTGGACTTGTATTGAAAAGTTGTTTGACACAACCATAATTACGAAAATGAATGAATACCTACA
ATACAATGACTTAAAATTTGTGATCTAGAGAAAAATACAAAAATTTGTATATGTAAGTCATCAC
CAATATAAGAAATACTGGCACTATTGAAAATTGGGCCTATCTGTCATATGCACATAGTGGATAA
ATTGTTACTCCCTCCTTTTCATATTATAAGTCGTTTGACTTTTTTGCTAGTCAAACTTCTTTAA
GATTGACCAGATTTATAGAAACGAAGGGTGTATTTTGTAATAGACTTGTTTGGCATTGTTGTTG
TTTGTAAAATACATAGTAAATGTTGCAGTGAGATAGTTTTGACCAAGTTGCAATTTTGTGAAAA
TCACTCTGCAAGTTATCTCTTTCAGTATTTATTAGTACCTGGAGATACCCAAATGCCATGCTCC
CTAAGTAAGCGAAAGTGGAGAGCAACCTCGTGGAGACTAGAGCTAGTGAATTCACTTTCTTTGA
TGTCACTTATTGCATTGTTTATCTCATCTTGGAAAAGGTGATCTATTCCAAGACGTTGAACTGC
ATCTACTAAGTGCATTTTCTTGGCTGTATCATTGTGCGTCTCAAACAGTATACGGACGTCCTGT
TTTAGTTTATCAGCCTTTTCCATCATCCAATCCTCCGATCT
Conservation Information
Conserved circRNAs osa_circ_023454
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021