Detail information of Os09g0533600_circ_g.2


General Information
CircRNA Name Os09g0533600_circ_g.2
ID in PlantcircBase osa_circ_040005
Alias Os09circ09954
Organism Oryza sativa
Position chr9: 20962582-20967388  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os09g0533600
Parent gene annotation Similar to Avr9/Cf-9 induced kinase 1. (Os09t0533600-01)
Parent gene strand -
Alternative splicing Os09g0533600_circ_g.1 Os09g0533600_circ_g.3
Support reads 6
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os09t0533600-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCTCACCGCCCCGGAGTCGTCCGACCTGCTCGTGCTCACCGCCGACACCGTCGTCGTCGTCGAG
CCCCGCCTCCCCGACGATTCCTTGCTCTTGGACGACctcggacatggtggggcgctccttggcg
ttcttgaggaggcaggactcggcgagcttggcgatgtcgcgggcggccttgacggagtactcgc
cgcggagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTCGGACATGGTGGGGCGCTCCTTGGCGTTCTTGAGGAGGCAGGACTCGGCGAGCTTGGCGATG
TCGCGGGCGGCCTTGACGGAGTACTCGCCGCGGAGCCTGGGATCCATGATCATGCGGAAGTTGC
GGCTGTCGGGGGCGAACTGGGCGACCCACTCCAGCAGCTTCTGCTCCCCCTGCGGCCGGTGGCG
GTCCAGCGTCCGCCGCCCCGTCAGGATCTCGTACAGCACCACCCCGAAGCTCCACACGTCGCTC
TTCACCGTCAGGTGCCCCGTCTCTATGTAGTCCGGCGCCGCGTACCCGTGCGTCCCAACCACCT
GCCACACATCATCATCATCATCATCATACACCATCTTGAGCTCAGCTATGTATGTATCATATAG
TAAGAACATGAAAAAGAAAAATTCAAACCTCTGATCGATTGGACTACGACAAGAAAAATAAACG
AAGCAACTAAGACCGATTTATGGATAAGACATGTTTTTAGCGAACCGTTCAAAAGCCAAAATGA
CATCAAATAGGGTACATGAAGGTAAAAACAAAAAAAAAACAATTTAAAACTAAGCAACTACAAA
TAGTTTATAGATAAAACCTTTATATATGTGTGTGTTATTAGTGGTTTAAAGCTAAGGCTATTAA
GGGGGTGTTTGGATACCCTGACTAAACTTTAGTCCCTGGTACATCGGATGTTTGGACACTAATT
TAGAGTATTAAATATAAACTAATTATAAAACTAATTACACGGTGGAGGTTAATTTGCGAGACGA
ATATATTAAGCCTAATTAGTCCATGATTTGATAATATAGTGCTACAGTAAATATGTGCTAATCA
TGGATTAATTAGGCTTAAATAGATTTGTCTCGCGAATTAGCCTCTATTTGTGTAATTAGTTTTA
TAAGTAGTCTATGTTTAATACTCCAAATTAGTGTCCAAATATCCGATGTAACAGGGACTAAAGT
TTAGTCAGTGTATCCAAACAACCCCTAAATAGACTATGATGAAAAGACCCAAAATCAACTTTAG
AATTATGTTTTAGAATTCAAATTTTTTGTTGTGGCTAATAAGCCAATAAGCAGACAATTATAGC
ATTGATCCATTTCCTAAGGATAATAACATAGCTCAAAGCTCCTTCGCAATGCAGGAATTTCATG
GAAATCTTCTAAAATTCCTATGTTCCAAAGGTCTGGTATGGTATGCCATAGAGCAGTTCTGCGT
CAATGCTGACACAAGGTGCAAAATTCAGGGGGAGAAGAGTGATGCATGCGTGGCATGTGTGCAT
ATGTAAGGAAGTGGTGGCAACTTGGTCCATGGCATTGACTTGCTGGATTGCGGTCAAGATTGTC
AGGTACACATCAAACAGGTGCACTGGACTGCTTGCCTACTTCAGTCAACGATGCTTTAAAGGCT
GTAGTATATAAGTTGCTTTCAGTGCCTGATGGATCAGACAATGCAGTTGCGAGAAGGCTATGGT
TTTGTTTGTAATTCTAATAGCAGGTTCAGATGGAGACATACCGCTGTTGAGACGTGAGTGTTTG
CTCCTGTTGGTCCCTCCCTTGCTAGCCCGAAGTCCGACAGCTTTGCTCTGAAGTCTTTGTCCAA
CAAAATGTTAGATGCTTTGAAGTCCCGGTAGATTACCTATCAAAATTGAGCAAATCAGATGAGG
ATCTTCCCTTTTGTACAAAATGGAAATGTCGTAACCAAAGAAGAAGAAAAGCTGAAGTAACTTT
GTATACTAAGCAGCAGTACGCAATTAGCACTGTAAATTATGACGATGACCTGAAAAAATGTGAT
AGGTTTAGCCTTCCCTAACAGCCTGTATATCTTGATGCTCACCAGCTATAGAGCCTTCTTGCCT
AAGTCCTTAATTGTTTTCTAGATTGGAATACTTGGTTCTACAGCTAAACTAGAACATAGAGAGG
ACAAATCGTATACGTTGGTTGCAACTAGGAGTAGTTAGTACTGATTATGCTTTCAGAAAGTGTC
AATGAAATTTGGTGCCTGGAATCTTACAGGAAAGTAATGGAGATGGAGATGGAATTGAACAAAC
CACTTTTGCCTCTTTTTCATCTAGCTCATCAATTCGTGGTCCTTATTTTCTCATTGACTTTACA
CTGGAATACTGGATTCACTGCACCTCTATTGCACTACCTCTAGTTACTATGGATGCACGGTCAA
AAGAACCTATTAAAACGTTGGTGCTGTCTCTCATCATATATTTTTATTGCCAAACTTTCTCCCA
CAAAAAACGAAATCACCTATTTGATAAAGATATATCTTTTCAGAGAAGTTGAAAGCATGTGGGC
AATGTATGTCTGAAGTATACCTGAACTTGCCCTTCATGCAGGTAAGCTAATCCTTCTGCAGCAC
CCAAGATTATTTGAAGCCTTCTATTCCATGAGAGAGGAGGATAAGCTCGGACGAATAAGTGATC
TTCCAGGCTCTTATTAGGCATATACTCATACACCAATAATCTTTGTGGCCCCCTTTCACCATCA
ACGGCACAATATCCAAGAAGCTTTACAAGGTTTGGGTGCTCAAGAACCCCAAGGAACTGTACTT
CCGCCAACCACTGCTTATGTCCCTGGGAGCAAAATTAAAAGAAACTGCAAAATATTAGGAACAG
AAGACAGGATTACTCATTAGAGGGATAGCATAGGAGATCAACCGCATTTGTTTTAGTAGCATTA
TAGCACAAAGCAAATATAGGAAACCAACAGACCTAATGCTGCCTTACAAGTAGTTTATTCATAA
CATCACTATAATTAGCGTGCATCCTAAATTCCTAATATACATCAACTGGTCAAGAAAAGACATC
ATAACTGAGTCAGTAAAATATCATCTAATTCGAGTAGAGAAACTTGGAAAAATCCTTATATTTT
TAGCAGACACCACTTAGAGAAAATGAAGCTTATGCTTGGGTATTCTATTAAGTTCAGGACTTGA
AATTAATTATTTCCTGTACTCCACTAAACGATATATTCACTACCGGTTTGTCAGTCTTTAGACA
TCACTTGCATAAATTCAGAATGGATATAGAGTCGCAAAGCACATGGAAATTGAAGTTTCTAGCT
GACTTTTGTTCTATATGTTCACGCACCAAAATTTTTCCTCCTAGTGAGTGAATAATAGTCAAAT
AAGACTAGCAACATGGTTGTGCAGGTTGCCCAGAAACGTAATCTATTCTATCCATTAGTCTTCT
TTGATTGAGCAAATTAGCTAACGGAATATTGATTTAGAGTGAAAGGTTGGTTCGCATCATTTTC
TAGGAGACATATTTCTACTGTAAGCATTCAGAGAAGACATGGTCTACTATTAATATTGATTGCC
ATTTGTTTTATGATGACCATGAATGAATATTCAACTTCCAAGTTTGAGGAAGTAAGGTTCCTAG
ATACTTGAAAAGTTCATTGCCGTTCAAATTCTATCCTGTATTTCCCCTCCATTTTGCTTTATTA
TGAATAAACAGTTGCCACGTGTGCCCATTGGTCCTATATTTAACCACATCTCCACGCCCAGCAC
CTCAACTAGTAATAGTTTATGCAGACCAGTAACTTCTATAGTCAACTGACAATGGACTGAAGTA
ATCCAATGCAATAGATTGACCCCATAAAATATACTATCAAAATTGTAAAATAACAGTAACAGGC
AATATCTCATCCTTGAAAGTTCTGCATTTTGATCCTGTCTTCCTGTCAAGATTGTCTACACAGA
GAGAGATTTTTAACATACTGATAATAGATAACCAAACCAATTTCAACATTTAGCAAGCCAGGAA
TATTTCCAATATTCCGGCAAACTAGAAAATGACTTGTGTCCATGGACTTCCTATGGATCAGAAC
AACATACTTGTCAGTTTATCCAGAGACCAATTCAAGATCAGCTAACACCAAGCACAGAATCCAT
TAACTTTACTCCCCATAATGAATCTTCCCATAACAGTCGTTAATCTAATCTAGTGGTCACTACT
GATGATTTTCATCAAATTTGGCAGAACTACACATTAAAAACAAAAACTCGCTAAGTTGCCTGAA
AGCATTCTTCTGCATTCTATGCCAGGATCTTGGCGAAGAGAAGTATCAAGAACAACAAAAATGG
CATCATTTGGGATCTCCCTTAAAAAAACACTTCCCTTATCTACCAGCACTAATTTCTGACAATA
CTGAACATAAGAGAGCAAACCTTAAACTAACAAAACTCATTCCCCAATTCTCCTATTCCCAAAT
TCCTATTCACCCCTAGTTATCAAACCGGAAATCAATCGCGCAGAATCACAAAGGGGGGAATACT
ACTCCTGGATCGGAATGGAGGATTCGTTCCCGGGTGACAACTGACAAGACATGATTGATGGTGT
CCAAGAAAAGTCAAGAGGAGGGGGTGCAGACTGCAAAGAGAGACAGAGACAGGGGAACGAGAAG
GAGGAGGAGAGCACGCAAACAAGCGAGTACCTGGAGACCCCGCTGGTTCAGGCACTTGACGGCG
ACGGCGAGGCGATCGGCGGCCTTGCCGTCGGCGGGGGAGGAGCGGACGAAGCCCTTGTAGACGC
TGCCGAAGCCGCCCTCGCCGAGCTTCTGGGCGCGGCTGAAGCCGTTGGTGGCGGCCTGGAGCTC
GTCGTAGTCGAAGTCCCGGAGCTGGCCGTGGCCGCGCTCCTCGTACAGCGACGAGATGCTCCGG
TGCGACGACGTCGACCCCGTCGACTTGCTCGCCGGCCTCACCGCCCCGGAGTCGTCCGACCTGC
TCGTGCTCACCGCCGACACCGTCGTCGTCGTCGAGCCCCGCCTCCCCGACGATTCCTTGCTCTT
GGACGAC
Conservation Information
Conserved circRNAs NA
PMCS 0.102858422
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR1846b-3p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015