Detail information of BGIOSGA006432_circ_g.8


General Information
CircRNA Name BGIOSGA006432_circ_g.8
ID in PlantcircBase osi_circ_003945
Alias 2:18782561|18786539
Organism Oryza sativa ssp. indica
Position chr2: 18782561-18786539  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA006432
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA006432_circ_g.6 BGIOSGA006432_circ_g.7
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA006432-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTGCACAAATATAACATTCTCCAGTATAGCCTTTGATACACCCATTAAAGCTGGAATCTCCCT
ATCCATATCAGCACATCTGTAGCTGAGGCAGACTTTcatccaattccttttgaagctttgacaa
gtggctcctagcatcaagtattttcatctgtaccagtttcagctcttgcgctgcttcctgggat
tttgagtt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATCCAATTCCTTTTGAAGCTTTGACAAGTGGCTCCTAGCATCAAGTATTTTCATCTGTACCAG
TTTCAGCTCTTGCGCTGCTTCCTGGGATTTTGAGTTCAGATCATTGTATTCTCTGTCTACAGAC
CTGAGCCAAGCAGAGTTTTGTACCATTACCAAATGCATAAATAACAACTAGAGGACTTCATATG
TAGTATTCTCACATCTACTGTTAGGATGAATTGGCATAAACATGATAGTTCGTGTGCACAGGAC
TAATCATCCCAACATTAATGAACAGCCATATAGATACAACTGCACGGTTATGTTTATAACTATC
ATGTACGCTACTACACTTGCATTGAATGTACATCAGCTCATGGTGTGCATGATTGATCAAAATA
TGCATAACTACAGATAGTCAGATACTGCTATTACTACTAATAGCTATCAGTAGCCCACTGATAA
AAATGCAGAAAGGAAGTCAATTGATGGAAGAGATAACTTTTTCAAACTACAGCTTGACAAATGA
CACAGGTAAACTGAACTGATCACAGCAACCAACAAAGGAATCACTGATCGCTGGTTGAAACAAA
TATAAGAAAAACAGAGTAGCACATACCCAAAGGCTTGACTAAGTTCCTTCTTGACTTCCTTCTC
AGAAGGAATCCTCCCTTTAAACACACTTCTGATTTTGTCCTTATGCTCATCATATCTGCATTTT
ACACAGTATGTGTTACTTGAACTTCTCACACAGCAAGCTTTAAGATTGGGAAATATAAAAAAGT
GAATCATAAAATAAGTAGGGTTATAAAAGGAGAGAGGAAGAAACATGCATCTTGTTAAGTTTCT
TCTTGGTTTCTTCCAATTCATCCTTCTTCACGTCTAGTAGTACCCTGTCATTGGAATCACTAAT
AATGCTGTCTTTTTCCCACTGAAGTGTTTTTATCTTCTGGTCCAAGCTAAATATCTCTGTGCGC
TTCTGATTTATAATTGAATCATAGTTCCTTTCTCCCAGCGCAAGTGCTTTCCTTTCAACTTCAA
TTTGCTGTCCAAATAGTATTCTCGAAAAAAATACTTTCATCAGAATTAAGAATGATGGCATACT
TTAAGACATCAAAGCATGTGGAGAAAAATATGAGCCAACGCCTAAGGGTGCAATGCTCAAACTG
TCTAATGCTGTGAGCCTGTGACATTTCTTTCTACTTCTGATAAAAATGTAACAAGCAAAGTGCA
GCTACATATATGGATGTTTCCAAGAACCAAAGATAATTGGATCAGGAAAGTACCAGATGTTTCT
CCTTTTCATCAATACGGGGAAGATTGTACTTTGAGAGGTCCATTTCCGCGGCATCGCGTTCACT
CTCTTTATCTTTCATGCGCCTTGAAATACCTTTCTGAAAAGTTAACGATAATGGAAGAAATGTA
ATTTCTTCTGAGATAGTTGCAGAAGATCATATTTGTGCTTGTCCAATGTTCTTTTCATGACTAA
CCTTGGAGGCAACCTTAGATTCTATCTGGCCAACAACTTCAGAGTAGCGAGTATTTACTTCAAG
ATAGCGTCCCCACAGAAACTGTTTCTGTGCCTCATTAGATTTCTGGTCATAAAGCGGGATTTTC
TTGTCAGAGCACATACTTTTTAAGAACAGGTGGGTTCAATATTAACTAGATAAAATTCACTGCC
TACTTGAGCAAATTATTTGATTAGATTCAGTAACATTCTTCCTCCAACAAAAACTGTTTAATAC
ATAACTCATACGTCCACTGAGATGCCACACCAAAACAGGACAATTATGAGGTGGATGAAGAATA
GAGCACATTTGCTATATGACTAACTCCATACGCATATTGATTTTGGAAATGATTTTGAAGCTTA
TAATCAGTGGAAGTTACAAATAAAAGTGTATACTTTAGCAATTAAATTCCAGAATACATAGAAT
CAGTATTCTCACCTTCTTATCCTGCAAATCATCATTAAGATTTGACAGTTTTGCTTTAGTTATG
TTTGTAAGGTGCATGGCAGCAGCATCAGTTAAAGGAGCATCAGGTATTGGCCCAAGATTATGTT
TGGTGAAGATCTTTCTGATTGCTGAATCCCGTTCGTGTTTCACTGACATGTGAGCCTGAAAACC
AAATATTTGGATGTAACTTTAAACTTTTAATGCCATAAAACAATGTCCACTATAGTTAATAATG
ACTGATAAAATCATAAAAAGAAGATATAAAAGATGATAACATTACGTCGGCTTCTGCCTGGAGC
CTTCCTGTTTCTCGCATCAAATCATTTATGGCCTTGGAAAGGAAGGAGCTTGTTGTATTTTCAT
CATCCACATCTCTTTCTAGTTTACTGATCTTATTTTGCAGCAATGCCATTCTTTCTTCAAATTT
CGTTTGCCACTCCTTTAGTTCATCATCGGTATCTAAACAAAGACAGTCAATTGTTGTAATGGTG
AGAACTAATGGGATGAAGCCTGAAGGGCACAGTGACACACCAAGGAGTCACTTACCTTCATTTT
CCTCAGAAAGAGCAGCATACTGTTGCTGCTGAAGTGTAAAATATGTAGTTCTAGCAGATGTACT
GGAGTTAATTTCCTGTTGAAGCCTCCTCAAGTCAGCTAAACTTTTTTCAGTACGACGAATTTTG
TCTTCAACACCTTGAACATTTGTTCTCAGTTCCTCCATTTGAATTTTTAAGGCATCTGACTTCT
CTTGATCTTGAGCAATATTGTCACGGAGCTGTCAAAATTAGTGAGAGTTAAAGTAAAAATAAAA
GGTACGTTAGTGAGACATGTGGGTCAAGGACACAATTGTTAGTGAGACATAAGTAGCATATAAT
AATAGATTAAGAAATAATTTCAGGGTCTACGGATGTCAGGTGAACATGCAAAAGCTGGTTATCA
CAACTTTGAATGGCACATAGAAACAATAACTAGTATCTAACTTGATGTGTACTCCCTCCATCCC
CAAATACAAGGGATTCTAGGTTATTTGAGGTAAATTAATTATAGAGAAAAAAGAAAAAAATGCC
CCTCATTAAATAAGGATATGTAGGGATTGGGAGAGTGGTTCGTAGTAAGATGGGGAGAAGTTTG
AATGGGAGGTGATTGATGTGAAAAGTAATACCAAATGTGTTACAATGGTGTCTGCTGTCAAATT
ACTTCATTAATTGCCAAATATTTACATTGTTTCTGCATTCCTCACCAATAACATCATTAAAGTC
AGAAGGACACCGTGTTGATAAATCAGACATCTTATGACAAATAATTAAAGGTAAAATATATTGA
TTAGCCATATATTCTGGCACAAATGCAGGGCAGAACGATACAATCCCTTCAATTCTTTTAGTTG
ACCAGTAATCATTTTAAAAAAAAAAAACATTGTAGCATTTCAAAGATCCAGAAAGAAATGATAG
CCCAACCCTTGGCAAATAATCTTACTACGAATGGCGGTCTAGCAGGAATGATTGAACAGAAGAT
TAGAGTACAATGGCGGTCTAGCAGGAATGATTGAACAGAAGATTAGAGTACCCTATATGCTTGG
TCTTTTAGAGTCTGAAGGTTCTCCAACTTTAACCTAAAAGTCTTGATTTCCTGTGCTTGATCCT
TGTGAAGTTTTTTTATGACTTCGAGAGCTTTGGTATAGCTGCACATGCAATACAGAAATTAAGG
CAGTCCAATGCTAGCCATAACGACATTTCAAGGAATAACGATGATTACTCTAGAGAATAATTTA
TCTCAAAATATTGTCATGTTTCAACTAATAAAGGTTATGCTCTTGACCAGAGCTTCCGAAGCAA
ACACAAAATAGTAACACATTCAAGTACCGGGTCGCAGAAAAGATATCATCAAACTTCTTCTTGA
GTGTCGATGGATCCTGCAAAGGCCAATTGGACTCGTCTTGGTGCACAAATATAACATTCTCCAG
TATAGCCTTTGATACACCCATTAAAGCTGGAATCTCCCTATCCATATCAGCACATCTGTAGCTG
AGGCAGACTTT
Conservation Information
Conserved circRNAs osa_circ_014713*
PMCS
Functional Information
Coding potential Y
Potential coding position 18786511-18786513(-)
18782604-18786513(-)
Potential amino acid sequence MDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQ
AQEIKTFRLKLENLQTLKDQAYRLRDNIAQDQEKSDALKIQMEELRTNVQGVEDKIRRTEKSLA
DLRRLQQEINSSTSARTTYFTLQQQQYAALSEENEDTDDELKEWQTKFEERMALLQNKISKLER
DVDDENTTSSFLSKAINDLMRETGRLQAEADAHMSVKHERDSAIRKIFTKHNLGPIPDAPLTDA
AAMHLTNITKAKLSNLNDDLQDKKKSNEAQKQFLWGRYLEVNTRYSEVVGQIESKVASKKGISR
RMKDKESERDAAEMDLSKYNLPRIDEKEKHLQIEVERKALALGERNYDSIINQKRTEIFSLDQK
IKTLQWEKDSIISDSNDRVLLDVKKDELEETKKKLNKIYDEHKDKIRSVFKGRIPSEKEVKKEL
SQAFGSVDREYNDLNSKSQEAAQELKLVQMKILDARSHLSKLQKELDESLPQLQMC*(-)
MLGATCQSFKRNWMKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKK
FDDIFSATRYTKALEVIKKLHKDQAQEIKTFRLKLENLQTLKDQAYRLRDNIAQDQEKSDALKI
QMEELRTNVQGVEDKIRRTEKSLADLRRLQQEINSSTSARTTYFTLQQQQYAALSEENEDTDDE
LKEWQTKFEERMALLQNKISKLERDVDDENTTSSFLSKAINDLMRETGRLQAEADAHMSVKHER
DSAIRKIFTKHNLGPIPDAPLTDAAAMHLTNITKAKLSNLNDDLQDKKKSNEAQKQFLWGRYLE
VNTRYSEVVGQIESKVASKKGISRRMKDKESERDAAEMDLSKYNLPRIDEKEKHLQIEVERKAL
ALGERNYDSIINQKRTEIFSLDQKIKTLQWEKDSIISDSNDRVLLDVKKDELEETKKKLNKIYD
EHKDKIRSVFKGRIPSEKEVKKELSQAFGSVDREYNDLNSKSQEAAQELKLVQMKILDARSHLS
KLQKELDESLPQLQMC*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021