Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d021592_circ_g.2 |
ID in PlantcircBase | zma_circ_009424 |
Alias | Zm07circ00079, zma_circ_0002505, GRMZM2G139931_C1 |
Organism | Zea mays |
Position | chr7: 157528889-157530245 JBrowse» |
Reference genome | AGPv4.38 |
Type | e-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d021592 |
Parent gene annotation |
Probable potassium transporter 15 |
Parent gene strand | - |
Alternative splicing | Zm00001d021592_circ_g.1 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d021592_T001:4 |
Conservation Information | |
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Conserved circRNAs | osa_circ_034005* |
PMCS | 0.364439969 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
157530234-157529139(+) 157530236-157528891(-) |
Potential amino acid sequence |
MTTSPYAFPISFMLPNTATNARQETSKNQFITGMYIWPMNFLEVWIILRRGKQPRAVACFIVEN IAVVIARLAISAARVAMNTTGQNA*(+) MITVAFLIVLFSLQRFGTSKVGLAVGPALFVWFCCLAGIGMYNLRVYGPEVLQAFNPVYIYYYF ERNPTEAWMSLGGCLLCATGSEAMFADLCYFSVKSVQLTFVFLVLPCLLLGYLGQAAFLMENLD KSQQVFFLSIPSQAFWPVVFIATLAALIASRAMTTAIFSTIKQATALGCFPRLKIIHTSRKFMG QIYIPVMNWFLLVSCLAFVAVFGSINEIGNAYGEVVMITVAFLIVLFSLQRFGTSKVGLAVGPA LFVWFCCLAGIGMYNLRVYGPEVLQAFNPVYIYYYFERNPTEAWMSLGGCLLCATGSEAMFADL CYFSVKSVQLTFVFLVLPCLLLGYLGQAAFLMENLDKSQQVFFLSIPSQAFWPVVFIATLAALI ASRAMTTAIFSTIKQATALGCFPRLKIIHTSRKFMGQIYIPVMNWFLLVSCLAFVAVFGSINEI GNAYGEVVMITVAFLIVLFSLQRFGTSKVGLAVGPALFVWFCCLAGIGMYNLRVYGPEVLQAFN PVYIYYYFERNPTEAWMSLGGCLLCATGSEAMFADLCYFSVKSVQLTFVFLVLPCLLLGYLGQA AFLMENLDKSQQVFFLSIPSQAFWPVVFIATLAALIASRAMTTAIFSTIKQATALGCFPRLKII HTSRKFMGQIYIPVMNWFLLVSCLAFVAVFGSINEIGNAYGEVVMITVAFLIVLFSLQRFGTSK VGLAVGPALFVWFCCLAGIGMYNLRVYGPEVLQAFNPVYIYYYFERNPTEAWMSLGGCLLCATG SEAMFADLCYFSVKSVQLTFVFLVLPCLLLGYLGQAAFLMENLDKSQQVFFLSIPSQAFWPVVF IATLAALIASRAMTTAIFSTIKQATALGCFPRLKIIHTSRKFMGQIYIPVMNWFLLVSCLAFVA VFGSINEIGNAY(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress; regulating the response to N deficiency |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |