Detail information of BGIOSGA013798_circ_g.3


General Information
CircRNA Name BGIOSGA013798_circ_g.3
ID in PlantcircBase osi_circ_013805
Alias Chr03:36813040_36813413(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr3: 38297162-38297535  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, find_circ
Parent gene BGIOSGA013798
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA013798-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTTGCAATCACCGATGGAAGAGCTAATGTGTCACTGAAGAAATCGACTGACCCAGAAGCCACT
TCAGATGCTCCAAGACCTTCTTCTCAAGAATTAAAGggtttcaatcattccatttcgtggagat
tttgctgaggttcttcttccaccttcaagatccatagcaatggcccgcaatcgtcttgagaagc
taccatgt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTTTCAATCATTCCATTTCGTGGAGATTTTGCTGAGGTTCTTCTTCCACCTTCAAGATCCATA
GCAATGGCCCGCAATCGTCTTGAGAAGCTACCATGTGGTGGCGGTTCTCCTTTAGCTCACGGCC
TTAGCACAGTAAGAACTAAGCATTTTCTCGAACCTAGCTATATGTTACAGCCCATATGTATTGA
TTAACAATTCGGTTTTTACCTCAAAGGCTGTCAGAGTGGGTTTGAATGCTGAAAAGAGCGGTGA
TGTTGGACGTATCATGATTGTTGCAATCACCGATGGAAGAGCTAATGTGTCACTGAAGAAATCG
ACTGACCCAGAAGCCACTTCAGATGCTCCAAGACCTTCTTCTCAAGAATTAAAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021