Detail information of Os06g0152800_circ_g.2


General Information
CircRNA Name Os06g0152800_circ_g.2
ID in PlantcircBase osa_circ_042258
Alias NA
Organism Oryza sativa
Position chr6: 2725818-2726027  JBrowse»
Reference genome IRGSP-1.0.38
Type   ei-circRNA
Identification method CIRI-long
Parent gene Os06g0152800
Parent gene annotation Conserved hypothetical protein. (Os06t0152800-01)
Parent gene strand -
Alternative splicing Os06g0152800_circ_g.3 Os06g0152800_circ_g.4
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AT
Number of exons covered Os06t0152800-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCGGCGGCGCGGCCGCGGCGGCGCTGCTGTGCGACGCCTCGGCGCGCCACAGGTCCCCCCTCGC
CACCACCGAGCTCTCCACGTCGCTCGTCCGGCTGTCtaccttgcgctcgaagccgtaccagatg
agatggcgcttggacaggtgcaccgggaacagcagcgtggtgtcgcgcacgaacagcaccgggc
cgagctgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 210
Transcript exons: 2725818-2726027
TACCTTGCGCTCGAAGCCGTACCAGATGAGATGGCGCTTGGACAGGTGCACCGGGAACAGCAGC
GTGGTGTCGCGCACGAACAGCACCGGGCCGAGCTGCACCATGAACAGCGGCGGCGCGGCCGCGG
CGGCGCTGCTGTGCGACGCCTCGGCGCGCCACAGGTCCCCCCTCGCCACCACCGAGCTCTCCAC
GTCGCTCGTCCGGCTGTC

Genomic sequence TACCTTGCGCTCGAAGCCGTACCAGATGAGATGGCGCTTGGACAGGTGCACCGGGAACAGCAGC
GTGGTGTCGCGCACGAACAGCACCGGGCCGAGCTGCACCATGAACAGCGGCGGCGCGGCCGCGG
CGGCGCTGCTGTGCGACGCCTCGGCGCGCCACAGGTCCCCCCTCGCCACCACCGAGCTCTCCAC
GTCGCTCGTCCGGCTGTC
Conservation Information
Conserved circRNAs NA
PMCS 0.235312024
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study