Detail information of Os06g0189600_circ_g.3


General Information
CircRNA Name Os06g0189600_circ_g.3
ID in PlantcircBase osa_circ_029994
Alias NA
Organism Oryza sativa
Position chr6: 4539446-4539562  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method circRNA_finder
Parent gene Os06g0189600
Parent gene annotation Hypothetical conserved gene. (Os06t0189600-01);Protein of unknow
n function DUF1677, Oryza sativa family protein. (Os06t0189600-0
3);Protein of unknown function DUF1677, Oryza sativa family prot
ein. (Os06t0189600-04);Protein of unknown function DUF1677, Oryz
a sativa family protein. (Os06t0189600-05)
Parent gene strand +
Alternative splicing Os06g0188700_circ_igg.1 Os06g0188700_circ_igg.2 Os06g0188700_circ_igg.3 Os06g0188875_circ_igg.1 Os06g0188875_circ_ag.1 Os06g0188875_circ_ag.2 Os06g0188875_circ_ag.3 Os06g0189600_circ_g.1 Os06g0189600_circ_g.2 Os06g0189600_circ_g.4 Os06g0189600_circ_g.5
Support reads 2
Tissues pistil
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0189600-04:1
Os06t0189600-03:1
Os06t0189600-05:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGCATGCCAGCCCCCACAAGATCACTTCATACGCAGTGGTCGACGGCGGCTCCCACATcaagtc
ctggcagtgccagcgcctcccgccaccgccattcgtctgtgaccccaagtaca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAGTCCTGGCAGTGCCAGCGCCTCCCGCCACCGCCATTCGTCTGTGACCCCAAGTACAAGCAT
GCCAGCCCCCACAAGATCACTTCATACGCAGTGGTCGACGGCGGCTCCCACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.215990028
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017